Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GB851_RS07230 Genome accession   NZ_CP045141
Coordinates   1394349..1396634 (+) Length   761 a.a.
NCBI ID   WP_164538254.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1389349..1401634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS07210 (GB851_07400) - 1389908..1390822 (+) 915 WP_038304087.1 GTP-binding protein -
  GB851_RS07215 (GB851_07405) - 1390977..1393058 (+) 2082 WP_164538253.1 carbon starvation CstA family protein -
  GB851_RS07220 (GB851_07410) - 1393066..1393260 (+) 195 WP_026036281.1 YbdD/YjiX family protein -
  GB851_RS07225 (GB851_07415) - 1393347..1394171 (+) 825 WP_003787625.1 pyruvate, water dikinase regulatory protein -
  GB851_RS07230 (GB851_07420) comA 1394349..1396634 (+) 2286 WP_164538254.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GB851_RS07235 - 1396668..1396817 (+) 150 WP_164538255.1 hypothetical protein -
  GB851_RS07240 (GB851_07430) msbA 1397000..1398850 (+) 1851 WP_164538256.1 lipid A export permease/ATP-binding protein MsbA -
  GB851_RS07245 (GB851_07440) dinB 1399059..1400108 (-) 1050 WP_038311328.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 83835.02 Da        Isoelectric Point: 9.2972

>NTDB_id=343714 GB851_RS07230 WP_164538254.1 1394349..1396634(+) (comA) [Kingella kingae strain F41215CHC]
MPPTRYLAAFCIGAISSFYLPEQGNVWAWCVGLLLCAGLAFCLRRVAWQQKAACTFLCLLLGAMYAIGRTEIALSQSQAY
PAQLYPTSQTIRVQVTGLPETDENGRTRFIGIAQTANQQNYRVLFQDYYARDWRVSDVWQTTARIRAAVATRNPVGFDRE
AWALANGIDGMASLGKERKAVAVSTKSSLHFFNQLRANIVQTWQRNASADYPQGVGLMTALAVGNRSDLSQAAWDSFRPL
GLNHLISISGLHISMVGVLAAWLAQRCMRLLPVLPARPKVISIVVGWLAAVVYTGLAGWEIPALRSLIMLTVWAIAWLAR
GHWGVWQTWWAACTAVLLYQPTSVLAVGFWLSFGLVGALLWALSCRLPSRPKPYDTLRQAFIGQWAATLVGGIATIFLFG
ILAVYSPLVNAVAIPFFSSILTPLALVASALPFAPLQRLAAWLGEHTIHILLALSRHLPEQAFAQPPSFLFWLTIFSTLI
ILLPRGTALKPLACVIIASFLLYTPPAPRAPLAVHVWDVGQGLSVLLQTRHHNLLFDTGTPAAEMALLPNLRALGIQQID
TLVLSHHDNDHDGGYAALHRAMPIRQTWAGQPAHYANAKLCTHGTNWQQDGVWFEFLTPNTQSDNDNDQSCVLRIVAGEQ
ALLIMGDVGNDGETALLRQYGEQLASQVLVLGHHGSKSSSHARFLDHIAPSVAIASSGFANHFRHPHPDVQQRLASRQIA
LWRTDTQGSLHFELGNHRAIELIEQQKKWWQRKPFAAPPPS

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=343714 GB851_RS07230 WP_164538254.1 1394349..1396634(+) (comA) [Kingella kingae strain F41215CHC]
ATGCCCCCAACACGCTACTTGGCTGCCTTTTGCATTGGCGCGATAAGCAGTTTTTATTTGCCCGAACAAGGCAATGTGTG
GGCGTGGTGTGTGGGTTTGCTATTGTGTGCAGGTTTGGCTTTTTGTTTACGCCGTGTCGCGTGGCAACAAAAAGCAGCCT
GCACTTTTTTGTGCCTACTTTTGGGCGCGATGTATGCCATTGGGCGCACCGAAATCGCGCTATCGCAATCGCAAGCCTAT
CCAGCACAACTGTATCCGACTTCGCAAACGATTCGCGTACAGGTAACGGGTTTGCCTGAAACCGATGAAAACGGCAGAAC
GCGCTTTATTGGCATCGCCCAAACAGCCAATCAACAAAACTATCGCGTGCTGTTCCAAGATTATTATGCGCGAGACTGGC
GCGTGAGCGATGTGTGGCAAACGACTGCGCGTATTCGTGCGGCGGTTGCCACGCGCAATCCAGTAGGCTTTGACCGCGAA
GCGTGGGCATTGGCAAACGGCATAGACGGCATGGCATCGTTGGGCAAAGAGCGCAAAGCCGTTGCCGTATCCACCAAAAG
CAGCCTGCACTTTTTTAACCAACTTCGCGCCAACATCGTGCAAACATGGCAGCGCAACGCCAGCGCAGACTATCCGCAAG
GCGTGGGCTTGATGACGGCTTTGGCGGTGGGCAATCGCAGCGATTTGTCGCAGGCTGCTTGGGATTCGTTTCGTCCGTTG
GGACTGAATCATTTGATTAGCATTTCGGGCTTGCACATTAGCATGGTGGGCGTGTTGGCAGCGTGGTTGGCGCAGCGTTG
TATGCGACTGCTGCCTGTATTGCCAGCGCGTCCCAAAGTCATCAGCATAGTTGTGGGCTGGCTGGCGGCGGTGGTTTATA
CGGGTTTGGCAGGCTGGGAAATTCCTGCACTTCGCAGCTTAATCATGCTCACGGTGTGGGCAATCGCGTGGCTGGCGCGT
GGACATTGGGGCGTGTGGCAAACGTGGTGGGCAGCCTGCACCGCCGTGTTGCTGTATCAACCCACATCGGTGCTGGCGGT
TGGGTTTTGGCTATCGTTTGGCTTGGTGGGCGCGTTGTTGTGGGCGTTATCGTGCAGGCTGCCTAGTCGCCCCAAACCAT
ACGACACATTGCGCCAAGCATTCATCGGGCAATGGGCGGCAACGCTGGTGGGCGGCATTGCCACGATTTTTTTGTTTGGC
ATACTCGCCGTGTACAGCCCATTGGTCAATGCCGTTGCCATACCGTTTTTTTCTAGCATACTCACGCCGCTGGCATTAGT
CGCGTCCGCCCTGCCATTCGCACCACTGCAACGCCTAGCCGCTTGGTTGGGCGAACACACCATACATATCTTGCTCGCAT
TAAGCCGACATCTGCCCGAACAAGCCTTCGCACAACCGCCTAGTTTCTTGTTTTGGCTGACCATTTTTTCCACGCTGATT
ATTTTGTTACCACGCGGCACAGCACTCAAACCGCTTGCTTGCGTCATCATCGCCAGTTTTTTGCTCTACACGCCCCCTGC
CCCACGCGCACCGCTTGCCGTTCACGTTTGGGACGTAGGGCAAGGCTTGTCGGTGCTATTGCAAACGCGCCACCACAATC
TTTTGTTTGACACAGGCACACCAGCCGCTGAAATGGCATTGTTACCCAATCTACGTGCACTCGGCATACAGCAAATAGAC
ACGCTCGTCTTATCGCACCACGACAACGACCACGATGGCGGCTACGCAGCATTGCACCGCGCTATGCCAATCCGCCAAAC
ATGGGCAGGGCAGCCTGCACATTACGCCAATGCCAAGCTCTGCACACACGGCACAAATTGGCAACAAGACGGCGTGTGGT
TTGAATTTTTAACGCCCAACACGCAATCCGACAACGACAACGACCAAAGCTGCGTATTGCGAATTGTGGCTGGCGAACAG
GCGTTGCTGATAATGGGCGATGTGGGCAACGATGGCGAAACCGCCCTGCTCCGTCAATATGGCGAACAACTAGCAAGTCA
AGTATTAGTGCTGGGGCATCACGGCAGCAAATCGTCCAGCCACGCCCGTTTTTTAGACCACATTGCGCCCAGCGTTGCCA
TTGCCAGCAGCGGTTTTGCCAACCATTTTCGCCACCCACACCCCGATGTACAGCAGCGTTTAGCCAGCCGACAAATTGCA
CTTTGGCGCACTGACACGCAAGGCAGCCTGCACTTTGAACTGGGCAACCATCGCGCGATTGAATTGATTGAACAGCAAAA
AAAATGGTGGCAACGCAAGCCGTTTGCCGCGCCGCCACCCAGTTGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(221-482)

Metallo-beta-lactamase superfamily (Lactamase_B)

(518-581)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

45.352

93.298

0.423