Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EWA65_RS10775 Genome accession   NZ_CP035688
Coordinates   2363507..2364514 (-) Length   335 a.a.
NCBI ID   WP_032469940.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2358507..2369514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS10750 rraA 2359097..2359618 (-) 522 WP_000456239.1 ribonuclease E activity regulator RraA -
  EWA65_RS10755 - 2359693..2360610 (-) 918 WP_055064336.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EWA65_RS10760 hslU 2360717..2362048 (-) 1332 WP_095468111.1 HslU--HslV peptidase ATPase subunit -
  EWA65_RS10765 hslV 2362105..2362656 (-) 552 WP_000208248.1 ATP-dependent protease subunit HslV -
  EWA65_RS10770 - 2362791..2363339 (-) 549 WP_000013359.1 SPOR domain-containing protein -
  EWA65_RS10775 cytR 2363507..2364514 (-) 1008 WP_032469940.1 DNA-binding transcriptional regulator CytR Regulator
  EWA65_RS10780 priA 2364822..2367026 (-) 2205 WP_154139006.1 primosomal protein N' -
  EWA65_RS10785 rpmE 2367280..2367498 (+) 219 WP_000643443.1 50S ribosomal protein L31 -
  EWA65_RS10790 - 2367809..2369086 (+) 1278 WP_055027443.1 malic enzyme-like NAD(P)-binding protein -
  EWA65_RS10795 metJ 2369173..2369490 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37024.55 Da        Isoelectric Point: 7.0139

>NTDB_id=343710 EWA65_RS10775 WP_032469940.1 2363507..2364514(-) (cytR) [Vibrio metoecus strain 08-2459]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRVAQISGPQNAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLSLPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=343710 EWA65_RS10775 WP_032469940.1 2363507..2364514(-) (cytR) [Vibrio metoecus strain 08-2459]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGTGTTTCAACCGCGACGGTGTCGCGTGCGTTGATGAATCCTGAGAA
AGTTTCTTCATCGACGCGTAAGCGTGTTGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCGAATTCTTTAGCGCGCAATT
TGCGTCGTAATGAGTCAAAAACCATCGTTGCTATCGTGCCGGATATCTGTGATCCCTACTTTTCTGAGATCATTCGTGGG
ATTGAAGATGCGGCAATGGAGCACGGTTATCTGGTGTTATTGGGTGATAGTGGCCAGCAAAAGCGTCGGGAAAACTCCTT
CGTTAATCTGGTGTTTACCAAACAAGCTGACGGGATGCTGCTACTTGGCACGGATTTGCCATTTGATGTCAGTAAACCTG
AACAGAAAAACCTGCCGCCAATGGTGATGGCATGTGAATTCGCCCCCGAACTTGAGCTGCCTACCGTTCACATTGATAAT
CTGACTTCAGCGTTTGAAGCAGTGAACTACTTGACCCAACTGGGGCATAAGCGTGTGGCGCAGATTTCTGGCCCTCAAAA
TGCTGCATTGTGTCAATTCCGTCATCAAGGCTATCAACAGGCGCTACGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCGAAAGCGGTGCGTCAGCTCTTATCGTTACCGGAGCAGCCTACCGCG
ATTTTCTGCCACAATGACACGATGGCAATCGGTGCGATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
GTCGGTTGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCGCCATTGACGACGATTTCTCAACCTCGCTATG
AAATTGGCCGCCAAGCCATGCTAATGATGTTAGAACTTCTGCGTGGGCATGATGTGCGTGCTGGCTCGCGTCTCTTAGAG
ACCAAGTTGGTCGTACGTGAGAGTGCTGCACCACCCAACAAGAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

98.806

100

0.988
  cytR Vibrio parahaemolyticus RIMD 2210633

90.419

99.701

0.901

Multiple sequence alignment