Detailed information NTG0343692

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: EWA65_RS04000
• Genome accession: NZ_CP035688
• Coordinates: 862011..863435 (-)
• Length: 474 a.a.
• NCBI ID: WP_154138743.1
• Uniprot ID: -
• Organism: Vibrio metoecus strain 08-2459
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 857011..868435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EWA65_RS03975	purT	857521..858696 (-)	1176	WP_000468090.1	phosphoribosylglycinamide formyltransferase 2	-
EWA65_RS03980	-	858849..859724 (-)	876	WP_055027178.1	AEC family transporter	-
EWA65_RS03985	cdd	859884..860771 (-)	888	WP_055027177.1	cytidine deaminase	-
EWA65_RS03990	-	860937..861614 (-)	678	WP_055027176.1	LrgB family protein	-
EWA65_RS03995	-	861605..861979 (-)	375	WP_032469900.1	CidA/LrgA family protein	-
EWA65_RS04000	sbcB	862011..863435 (-)	1425	WP_154138743.1	exodeoxyribonuclease I	Machinery gene
EWA65_RS04005	-	863583..864956 (-)	1374	WP_154138744.1	L-cystine transporter	-
EWA65_RS04010	msrB	865254..865700 (+)	447	WP_055027175.1	peptide-methionine (R)-S-oxide reductase MsrB	-
EWA65_RS04015	cobT	866133..867158 (+)	1026	WP_095458771.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
EWA65_RS04020	-	867158..867943 (+)	786	WP_055027174.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54637.03 Da
• Isoelectric Point: 6.0798

>NTDB_id=343692 EWA65_RS04000 WP_154138743.1 862011..863435(-) (sbcB) [Vibrio metoecus strain 08-2459]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSHGLSEP
EFIARIHAEFSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGMEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKLKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKAPQPLLDLDAEALQARLYTRYEDLAPDELPIPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQLYDGFFSPADRAAMDIIRTTAPENLGNLDIKVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=343692 EWA65_RS04000 WP_154138743.1 862011..863435(-) (sbcB) [Vibrio metoecus strain 08-2459]
ATGCAGCAAGAACACCAGCCCACTTTTTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAGGATCGTCCAAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATTATTGGTGAGCCGCTGGTCATTTACTGCCAATTACCCAATG
ATTATTTACCTGCGCCTGAAGCGGCACTGATTACCGGCATTACTCCACAAAAGGCGAATAGCCACGGCTTGTCAGAGCCA
GAATTCATCGCCCGAATCCACGCAGAGTTTTCCACGCCGAATACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
TGAAGTGACGCGCTACACCTGTTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCACGCTGGG
ATCTACTGGATGTGATCCGCGCTTGTCATGCTCTGCGCCCTGAAGGCATGGAATGGCCAGAAAATGAAGATGGCTTTACC
AGCTTCAAACTAGAACACCTTTCTGTTGCCAACGGCATTGAACACAGCAACGCACACGATGCCATGGCCGATGTGATTGC
CACGATTGAATTGGCGAAAAAGCTCAAAGCCGCGCAGCCTAAGTTATTCGACTATTTTTTTAACATGCGCCACAAACGTA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGCATGCTTGGCCGTGAACGCCAGTAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCGACCAACCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGCCCCTCA
GCCACTACTGGATCTGGATGCAGAAGCGTTGCAAGCGCGCCTCTATACACGCTATGAAGACTTAGCACCCGATGAACTGC
CGATTCCTGTGAAGTTAGTACATCTCAACAAATGCCCAATTCTGGCTCCGGCCAAAACCTTAACCGCAGAGAATGCCGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCGCATTTGAATGTGATTCGCCAACATCCAGAAATTCGTGAAAAGCTTGT
CTCAGTGTTCAGTCAAGAACGTGAGTTTGCCAAGGAAAACAATGTAGATAGCCAATTGTATGATGGTTTTTTCTCTCCTG
CCGATCGCGCAGCGATGGATATCATTCGAACCACTGCTCCGGAAAACCTCGGAAACCTTGACATAAAAGTGGCAGATAAA
CGGATTGAACCACTTCTCTTTCGCTACCGCGCACGCCATTATCCACATACCTTAACCGATGCCGAACAACGGCGTTGGGC
GGCGCATTGTCGTGACTATTTCGAGCGCAATCTGGAAAGCTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAAAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	94.093	100	0.941