Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EWA65_RS00980 Genome accession   NZ_CP035688
Coordinates   197791..198309 (+) Length   172 a.a.
NCBI ID   WP_001130222.1    Uniprot ID   A0A271VU94
Organism   Vibrio metoecus strain 08-2459     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 192791..203309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS00970 - 193198..196053 (+) 2856 WP_154138627.1 M16 family metallopeptidase -
  EWA65_RS00975 gshA 196165..197738 (+) 1574 Protein_165 glutamate--cysteine ligase -
  EWA65_RS00980 luxS 197791..198309 (+) 519 WP_001130222.1 S-ribosylhomocysteine lyase Regulator
  EWA65_RS00985 - 198393..199673 (-) 1281 WP_055027861.1 HlyC/CorC family transporter -
  EWA65_RS00990 - 199756..200550 (-) 795 WP_055051707.1 inner membrane protein YpjD -
  EWA65_RS00995 ffh 200762..202147 (+) 1386 WP_000462721.1 signal recognition particle protein -
  EWA65_RS01000 rpsP 202384..202632 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  EWA65_RS01005 rimM 202660..203214 (+) 555 WP_000061901.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18945.81 Da        Isoelectric Point: 5.5455

>NTDB_id=343684 EWA65_RS00980 WP_001130222.1 197791..198309(+) (luxS) [Vibrio metoecus strain 08-2459]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGGQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKGIAQKVIAAGISVNRNDELA
LPDAMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343684 EWA65_RS00980 WP_001130222.1 197791..198309(+) (luxS) [Vibrio metoecus strain 08-2459]
ATGCCATTACTAGACAGTTTTACGGTTGATCACACTCGGATGAATGCCCCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGCTTTACTCTTCCAAACAAAGACATTCTGTCTGAGCGCGGTATTC
ATACCTTAGAGCATTTGTACGCGGGTTTTATGCGTGCTCATCTCAATGGTGGCCAAGTGGAAATCATTGATATCTCTCCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGGGCACCAACAGAGCAGCAAGTCGCGCAGGCTTGGCTAGCCGC
GATGCAAGATGTGTTAAAAGTGGAAAGCCAAGATAAAATTCCTGAGCTCAACGAATACCAATGCGGCACAGCCGCAATGC
ATTCGCTAGAAGAAGCCAAAGGCATTGCGCAGAAAGTGATTGCGGCGGGTATCTCGGTAAATCGCAACGATGAGCTGGCG
CTGCCTGACGCTATGCTTAATGAACTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A271VU94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

94.186

100

0.942

Multiple sequence alignment