Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   GB851_RS01900 Genome accession   NZ_CP045141
Coordinates   379792..383232 (-) Length   1146 a.a.
NCBI ID   WP_164538059.1    Uniprot ID   -
Organism   Kingella kingae strain F41215CHC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 374792..388232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB851_RS01885 (GB851_01970) - 377473..378138 (+) 666 WP_032133847.1 lysophospholipid acyltransferase family protein -
  GB851_RS01890 (GB851_01975) - 378160..379110 (+) 951 WP_043903165.1 phosphatidate cytidylyltransferase -
  GB851_RS01895 (GB851_01980) - 379138..379446 (+) 309 WP_003789511.1 hypothetical protein -
  GB851_RS01900 (GB851_01985) recC 379792..383232 (-) 3441 WP_164538059.1 exodeoxyribonuclease V subunit gamma Machinery gene
  GB851_RS01905 (GB851_01990) - 383407..384288 (-) 882 WP_038311154.1 peptidyl-prolyl cis-trans isomerase -
  GB851_RS01910 (GB851_01995) - 384304..384576 (-) 273 WP_003785498.1 BolA family protein -
  GB851_RS01915 (GB851_02000) - 384573..384866 (-) 294 WP_173020718.1 YciI family protein -
  GB851_RS01920 (GB851_02005) - 384863..385408 (-) 546 WP_038306943.1 septation protein A -
  GB851_RS01925 (GB851_02010) - 385497..385694 (-) 198 WP_003785502.1 DUF2788 domain-containing protein -
  GB851_RS01930 (GB851_02015) metZ 385786..386964 (-) 1179 WP_003785503.1 O-succinylhomoserine sulfhydrylase -
  GB851_RS01935 (GB851_02025) iscX 387178..387375 (+) 198 WP_003785505.1 Fe-S cluster assembly protein IscX -

Sequence

Protein


Download         Length: 1146 a.a.        Molecular weight: 131062.29 Da        Isoelectric Point: 5.7683

>NTDB_id=343684 GB851_RS01900 WP_164538059.1 379792..383232(-) (recC) [Kingella kingae strain F41215CHC]
MLHLYQSNQLENLAQMMLNLHQSQPLSHPLQAEYILVQSQGMRRYINQYWAQHSPIAANLHFELPAQLAWQLMREALPNA
PKLSPFSSDVMQWRLLQLFQSRHFAEDGELASAQEMLRDYVQQGEMSAYQLARQLADVFDQYLMYRPDWIEAWSNQQNVA
ELSQREDCAQEQQWQAAIWRELLRDEQRAPHRAQMQRVLMDSLANQTIRRLPERILMFGITALAPSHLQLLQEIAKQRDV
HIFALNPSAMYWGDLLEPAQILQQTDDVDLSLQGHPLLASWGKQGRNFFNDLSVAEARQDEAHQQFAEQAKSPNLLHSLQ
YQIQQLVLPEQAHDDDWLARHDAYLRESVLQQNLDVGEYYVRHVQQDLSPEQKAMVQLNADSSLHIHSAHSPLRELQILK
DRILLALAQNPSWQPHDIAVLTPNIEPYAPFIDSVFGEYSDAPLPYSLADVKLTRKQPALDALAQALDLLNSRFEAEQVL
ALLNTEPVLQQWHINRADLPLLHSAVAELNIRWGSDASERAQYGDANNLFTWQQGLDRLVLGWLQPAQSGATWQNIAPHT
SHPDHLPILANFVAFVRFLSHTKQQWQQPASVAQWCERLQQFTQTLLGDGDTTQQAALQTWRKALDDWQEQAEIAQFSEP
LSSPIACQHIRRSLDEPTDAGLLRGGITFCSMVPMRSLPFKMLCLLGLNDGTFPRNTKAAPFDLIAKQPRKGDRSRRDDD
RYLFLEAILSAREQLYLSYIGRDIRSDAERAPSTLLSELVDTISALSDVPSSDLYQHWVTHHPLQAFSRRYFASAEQDNP
HLSSTRSDFAHALNLAQQGQTHQAKNFVDWRNTDNDPATLIRQKDFLRFWRNPVRHWLHHTLNWQSPYFAGNHESEEPFL
SDQPRRLDDAYVQARMHNQSFDDTAAYLRAQSLLPAGELGKQEAKSYEIAAKALDTNLLNSPRLPHRSGELACGQGSLHF
DLSHNHEAGQILLARDFLSDNNTHGKLTSPDQVQLLLQHLIYCAATPDHEPVARQTHYVSLTQQMSLPPMSQAQAQAALR
VWLAYYAQGQQAPLPYFARVNWAAAMALYTKKDANWLVAQNAAADKYHAGYFGMAQEDYPEVQLVFGRDPDAEPLYTLPE
FQQITEDLFEPLQVCLQAFADNKDKK

Nucleotide


Download         Length: 3441 bp        

>NTDB_id=343684 GB851_RS01900 WP_164538059.1 379792..383232(-) (recC) [Kingella kingae strain F41215CHC]
ATGCTGCACCTATATCAATCCAACCAACTCGAAAACTTGGCGCAGATGATGTTAAACCTACATCAATCGCAGCCTTTGTC
GCACCCGTTGCAGGCGGAATACATTTTGGTGCAAAGCCAAGGCATGCGCCGCTACATCAACCAATATTGGGCGCAGCATT
CGCCCATTGCCGCCAATTTGCACTTTGAATTGCCCGCACAACTGGCGTGGCAACTGATGCGCGAAGCCTTGCCCAATGCG
CCCAAATTAAGCCCGTTTTCCAGCGACGTGATGCAATGGCGATTGCTGCAATTATTCCAATCGCGCCATTTTGCGGAAGA
CGGCGAACTGGCATCGGCACAAGAAATGTTGCGCGATTATGTGCAGCAGGGCGAAATGTCGGCGTATCAGTTAGCGCGAC
AGCTTGCCGATGTGTTCGACCAATATTTGATGTATCGCCCCGATTGGATTGAAGCGTGGTCAAATCAACAAAATGTAGCG
GAATTGTCGCAGCGCGAAGATTGCGCCCAAGAACAGCAATGGCAAGCGGCAATTTGGCGCGAATTGTTGCGCGATGAACA
ACGCGCTCCGCATCGAGCGCAAATGCAGCGCGTGTTAATGGATTCGTTGGCAAATCAAACAATTCGCAGGCTGCCCGAGC
GGATTTTAATGTTTGGGATTACTGCCCTTGCGCCATCGCATTTGCAACTGTTGCAAGAAATCGCCAAACAGCGCGATGTA
CATATTTTTGCGCTCAACCCCAGTGCGATGTATTGGGGCGATTTGCTTGAACCTGCACAAATTTTGCAGCAAACCGATGA
CGTGGATTTGTCGTTGCAAGGACACCCATTGCTGGCATCGTGGGGCAAACAAGGGCGCAATTTTTTCAACGATTTGAGCG
TTGCCGAAGCGCGTCAAGATGAAGCGCATCAGCAATTTGCCGAGCAAGCGAAGTCGCCCAATTTACTGCACAGTTTGCAA
TACCAAATCCAGCAGCTAGTATTGCCCGAACAGGCGCACGATGACGATTGGTTGGCACGGCACGATGCTTATTTGCGCGA
ATCGGTGTTGCAACAAAATTTGGACGTAGGCGAATACTATGTCCGCCACGTTCAGCAAGATTTATCGCCCGAACAAAAAG
CGATGGTGCAGCTCAACGCCGATAGCAGCCTGCACATTCACAGCGCACACAGTCCGTTGCGCGAATTGCAGATTTTAAAA
GACCGCATTTTGCTTGCTTTGGCGCAAAACCCAAGTTGGCAGCCACACGATATTGCCGTACTCACCCCCAATATTGAGCC
ATACGCGCCGTTTATTGACAGCGTGTTTGGCGAATATTCCGATGCGCCTTTGCCGTATTCGCTTGCCGATGTCAAACTCA
CGCGCAAGCAGCCTGCACTTGATGCTTTGGCGCAAGCGTTGGATTTGCTCAACAGCCGTTTTGAAGCGGAACAAGTGTTG
GCATTGCTCAACACCGAACCCGTGTTGCAACAATGGCACATCAACCGCGCCGACTTGCCCTTGCTGCACAGCGCGGTTGC
CGAACTCAATATCCGCTGGGGCAGCGATGCCAGCGAACGCGCCCAATATGGCGATGCCAATAATTTGTTTACATGGCAAC
AAGGGCTAGACCGCTTGGTTTTGGGCTGGTTGCAGCCTGCACAATCAGGCGCAACGTGGCAAAACATCGCGCCCCACACC
AGCCACCCCGACCATTTGCCGATTTTGGCGAATTTTGTCGCGTTTGTGCGATTCCTGTCCCACACCAAACAACAATGGCA
ACAACCAGCCAGCGTGGCGCAATGGTGCGAACGCTTGCAACAGTTCACACAAACCTTATTGGGCGATGGCGACACCACGC
AACAAGCCGCCTTGCAAACGTGGCGCAAAGCCTTGGACGATTGGCAAGAGCAAGCCGAAATCGCCCAATTTAGCGAACCA
TTATCCAGCCCCATTGCCTGCCAACACATTCGCCGTAGCTTGGACGAACCAACCGATGCAGGCTTGTTGCGCGGTGGCAT
CACGTTTTGCAGCATGGTTCCGATGCGCTCTTTGCCGTTTAAGATGTTGTGTTTATTGGGATTGAATGACGGCACGTTTC
CGCGCAACACCAAAGCCGCACCGTTTGACTTAATCGCCAAACAACCGCGCAAAGGCGACCGTTCGCGCCGTGATGACGAC
CGTTATTTGTTTTTGGAAGCGATTTTATCGGCACGCGAACAGCTTTATTTGTCCTACATTGGGCGCGATATTCGCAGCGA
TGCCGAACGCGCACCGTCCACGCTATTGAGCGAATTGGTGGACACGATTTCCGCTTTGAGCGATGTGCCAAGCAGCGATT
TGTATCAGCATTGGGTTACGCATCACCCCTTGCAGGCGTTTTCGCGCCGATATTTTGCATCTGCCGAACAGGACAACCCA
CACTTATCCAGCACGCGCAGCGACTTTGCCCACGCGCTGAATTTGGCGCAACAAGGTCAAACGCATCAAGCCAAAAATTT
TGTCGATTGGCGCAACACAGACAACGACCCAGCCACTTTAATCCGCCAAAAAGATTTTTTACGCTTTTGGCGCAACCCCG
TTCGCCATTGGCTGCACCACACTTTGAACTGGCAAAGCCCGTATTTTGCAGGCAACCACGAAAGCGAAGAGCCATTTTTG
TCCGACCAACCGCGCCGTTTGGACGATGCCTATGTGCAGGCGCGAATGCATAATCAATCGTTTGATGACACTGCGGCTTA
TCTTCGCGCCCAAAGTTTGTTGCCAGCAGGCGAACTGGGTAAGCAAGAAGCAAAAAGTTATGAAATTGCAGCAAAGGCGT
TGGATACCAATTTGCTTAATAGTCCGCGTTTGCCGCATCGTTCGGGCGAATTAGCTTGCGGACAGGGCAGCCTGCACTTT
GATTTGTCGCACAACCACGAAGCAGGGCAAATCTTGTTGGCACGTGATTTTTTAAGCGATAACAACACGCACGGCAAATT
GACATCGCCCGACCAAGTGCAACTGTTGCTGCAACATTTGATTTATTGCGCGGCAACGCCCGACCATGAACCTGTGGCAC
GGCAAACGCATTATGTGAGCCTGACACAGCAAATGAGCTTGCCACCGATGTCGCAAGCGCAAGCGCAGGCTGCTTTGAGG
GTGTGGCTGGCTTATTACGCGCAAGGGCAGCAAGCACCGTTGCCCTATTTTGCGCGAGTAAACTGGGCGGCGGCGATGGC
GTTGTACACCAAAAAAGATGCCAACTGGTTGGTAGCGCAAAACGCAGCGGCAGACAAATACCACGCTGGCTATTTTGGCA
TGGCGCAGGAAGATTACCCCGAAGTGCAGCTGGTGTTTGGGCGCGACCCCGATGCCGAACCGCTATACACCTTGCCCGAA
TTTCAGCAGATAACGGAAGATTTGTTTGAGCCGTTGCAGGTGTGTTTGCAGGCGTTTGCGGACAATAAAGATAAGAAATA
G

Domains

Predicted by InterProScan.

Exodeoxyribonuclease V, gamma subunit (RecC_N)

(2-325)

RecC C-terminal domain (RecC_C)

(841-1067)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

44.742

97.906

0.438
  recC Neisseria gonorrhoeae MS11

44.652

97.906

0.437

Multiple sequence alignment