Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   EWA65_RS00835 Genome accession   NZ_CP035688
Coordinates   170079..171089 (+) Length   336 a.a.
NCBI ID   WP_055029829.1    Uniprot ID   A0A0Q0W5U6
Organism   Vibrio metoecus strain 08-2459     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 165079..176089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS00800 ftsB 165127..165411 (+) 285 WP_055029823.1 cell division protein FtsB -
  EWA65_RS00805 ispD 165408..166106 (+) 699 WP_055027870.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EWA65_RS00810 ispF 166103..166579 (+) 477 WP_095457712.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EWA65_RS00815 truD 166609..167694 (+) 1086 WP_154138618.1 tRNA pseudouridine(13) synthase TruD -
  EWA65_RS00820 surE 167696..168448 (+) 753 WP_055029827.1 5'/3'-nucleotidase SurE -
  EWA65_RS00825 - 168441..169067 (+) 627 WP_055027869.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  EWA65_RS00830 nlpD 169067..170005 (+) 939 WP_154138619.1 murein hydrolase activator NlpD -
  EWA65_RS00835 rpoS 170079..171089 (+) 1011 WP_055029829.1 RNA polymerase sigma factor RpoS Regulator
  EWA65_RS00840 mutS 171168..173756 (-) 2589 WP_154138620.1 DNA mismatch repair protein MutS -
  EWA65_RS00845 cysM 174038..174925 (-) 888 WP_154138621.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38596.42 Da        Isoelectric Point: 4.3131

>NTDB_id=343681 EWA65_RS00835 WP_055029829.1 170079..171089(+) (rpoS) [Vibrio metoecus strain 08-2459]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVAVEGASDDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=343681 EWA65_RS00835 WP_055029829.1 170079..171089(+) (rpoS) [Vibrio metoecus strain 08-2459]
ATGAGTGTCAGCAATACTGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAACTCTCTAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGACGATGTTCGTGAGGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCCACCCAAATGTATCTCAGCGAGATTGGTTTTTCACCACTCCTTACCGCCGAAGAAGAAGTGCTCTAT
GCTCGCCGCGCTCTACGTGGTGACGAAGCAGCACGCAAACGCATGATTGAAAGTAACTTGCGTTTAGTGGTTAAAATTTC
ACGTCGCTACAGCAACCGTGGGTTAGCCCTGCTTGATCTGATTGAAGAAGGCAATCTCGGTTTGATTCGTGCGGTTGAGA
AATTCGATCCTGAACGTGGCTTCCGTTTCTCAACTTACGCCACATGGTGGATTCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACCCGCACTATTCGTCTGCCTATCCATGTCGTCAAAGAGCTGAACATTTACCTGCGTACTGCGCGTGAATTGTC
CCAACGTCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGCTGGATCGTCCCGTTGATGATGTGACCAAAATGC
TGCGACTCAACGAACGCATCAGCTCTGTGGATACACCAATTGGTGGCGATGGTGATAAAGCGTTGCTAGACATCTTGCCA
GATTCCAATAATGCGGATCCTGAGTTTTCCACTCAAGATGATGACATCCGTGAATCGCTGCTCAACTGGTTAGATGAACT
CAATCCAAAACAGAAAGAAGTGCTTGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCGTCCACCTTGGAAGAAGTAGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAAGTGGAAGGGCTGCGTCGTTTGCGTGAGATTCTGGTCAAA
CAAGGTTTGAATATGGAAGCACTGTTTAACGTTGAATATGACGTCAATTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 3 (Sigma70_r3)

(175-248)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0W5U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

98.503

99.405

0.979

Multiple sequence alignment