Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   EPB59_RS10135 Genome accession   NZ_CP035686
Coordinates   2242864..2243874 (-) Length   336 a.a.
NCBI ID   WP_000116729.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237864..2248874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS10125 cysM 2239042..2239929 (+) 888 WP_001279364.1 cysteine synthase CysM -
  EPB59_RS10130 mutS 2240197..2242785 (+) 2589 WP_154172597.1 DNA mismatch repair protein MutS -
  EPB59_RS10135 rpoS 2242864..2243874 (-) 1011 WP_000116729.1 RNA polymerase sigma factor RpoS Regulator
  EPB59_RS10140 nlpD 2243948..2244886 (-) 939 WP_001242135.1 murein hydrolase activator NlpD -
  EPB59_RS10145 - 2244886..2245512 (-) 627 WP_154172599.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  EPB59_RS10150 surE 2245505..2246257 (-) 753 WP_055043664.1 5'/3'-nucleotidase SurE -
  EPB59_RS10155 truD 2246259..2247344 (-) 1086 WP_000129751.1 tRNA pseudouridine(13) synthase TruD -
  EPB59_RS10160 ispF 2247374..2247850 (-) 477 WP_000619212.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  EPB59_RS10165 ispD 2247847..2248544 (-) 698 Protein_1970 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  EPB59_RS10170 ftsB 2248541..2248825 (-) 285 WP_001263190.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38568.36 Da        Isoelectric Point: 4.3131

>NTDB_id=343658 EPB59_RS10135 WP_000116729.1 2242864..2243874(-) (rpoS) [Vibrio metoecus strain 2011V-1169]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVAVEGASDDAREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=343658 EPB59_RS10135 WP_000116729.1 2242864..2243874(-) (rpoS) [Vibrio metoecus strain 2011V-1169]
ATGAGTGTCAGCAATACTGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAGCTCTCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGACGATGCTCGTGAGGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCCACACAAATGTATCTCAGCGAGATTGGTTTTTCACCACTCCTTACCGCCGAAGAAGAAGTGCTCTAT
GCTCGCCGCGCTCTACGTGGTGACGAAGCAGCGCGCAAACGTATGATTGAAAGTAACTTGCGCTTGGTTGTTAAAATTTC
ACGTCGCTACAGCAACCGTGGGTTAGCCCTGCTTGATTTGATTGAAGAAGGCAATCTCGGCTTGATTCGTGCGGTTGAAA
AATTCGATCCTGAACGTGGTTTTCGCTTTTCAACTTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCGCTGATG
AATCAAACCCGCACCATTCGTCTACCAATCCATGTCGTCAAAGAGCTGAATATTTACCTGCGTACTGCGCGTGAATTGTC
ACAACGTCTTGACCACGAACCTACGCCAGAAGAAATAGCCCTTGAGCTGGATCGTCCCGTCGATGATGTGACCAAAATGC
TGCGACTCAACGAGCGTATCAGCTCTGTAGATACACCAATTGGTGGCGATGGTGATAAAGCTTTGTTGGATATCTTGCCA
GATTCCAATAACGCGGATCCTGAGTTTTCTACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTAGATGAACT
CAATCCAAAACAGAAAGAAGTATTGGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCGTCCACCTTGGAAGAAGTGGGGC
GTGAGATCAATCTAACTCGTGAACGTGTGCGTCAAATTCAAGTGGAAGGCTTACGTCGTCTGCGTGAGATTCTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTATTTAACGTTGAGTACGACGTCAACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 3 (Sigma70_r3)

(175-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

98.204

99.405

0.976

Multiple sequence alignment