Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EPB59_RS09990 Genome accession   NZ_CP035686
Coordinates   2215671..2216189 (-) Length   172 a.a.
NCBI ID   WP_055051706.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2210671..2221189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS09965 rimM 2210765..2211319 (-) 555 WP_055051708.1 ribosome maturation factor RimM -
  EPB59_RS09970 rpsP 2211347..2211595 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  EPB59_RS09975 ffh 2211832..2213217 (-) 1386 WP_000462721.1 signal recognition particle protein -
  EPB59_RS09980 - 2213430..2214224 (+) 795 WP_055051707.1 inner membrane protein YpjD -
  EPB59_RS09985 - 2214307..2215587 (+) 1281 WP_055027861.1 HlyC/CorC family transporter -
  EPB59_RS09990 luxS 2215671..2216189 (-) 519 WP_055051706.1 S-ribosylhomocysteine lyase Regulator
  EPB59_RS09995 gshA 2216242..2217816 (-) 1575 WP_154172578.1 glutamate--cysteine ligase -
  EPB59_RS10000 - 2217928..2220783 (-) 2856 WP_195706980.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18961.81 Da        Isoelectric Point: 5.5455

>NTDB_id=343655 EPB59_RS09990 WP_055051706.1 2215671..2216189(-) (luxS) [Vibrio metoecus strain 2011V-1169]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLYAGFMRAHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKGIAQKVIAAGISVNRNDELA
LPDAMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343655 EPB59_RS09990 WP_055051706.1 2215671..2216189(-) (luxS) [Vibrio metoecus strain 2011V-1169]
ATGCCATTACTAGACAGTTTTACGGTTGATCACACGCGGATGAATGCCCCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACCGTGCCTAACAAAGACATTCTGTCTGAGCGCGGTATTC
ATACCTTAGAGCATTTGTACGCAGGCTTTATGCGTGCTCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCACCGACAGAGCAGCAAGTAGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTAAAAGTGGAAAGCCAAGATAAAATTCCTGAGCTCAACGAATACCAGTGCGGCACAGCCGCAATGC
ATTCGCTAGAAGAAGCCAAAGGCATTGCGCAGAAAGTGATTGCGGCAGGTATCTCTGTTAACCGTAACGATGAGCTGGCG
CTGCCTGACGCTATGCTTAATGAACTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

94.767

100

0.948

Multiple sequence alignment