Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EPB59_RS00200 Genome accession   NZ_CP035686
Coordinates   46916..47923 (+) Length   335 a.a.
NCBI ID   WP_055051305.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 48798..49235 46916..47923 flank 875


Gene organization within MGE regions


Location: 46916..49235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS00200 cytR 46916..47923 (+) 1008 WP_055051305.1 DNA-binding transcriptional regulator CytR Regulator
  EPB59_RS00205 - 48091..48639 (+) 549 WP_055051304.1 SPOR domain-containing protein -
  EPB59_RS00210 tnpA 48798..49235 (+) 438 WP_142740806.1 IS200/IS605-like element IS1004 family transposase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37079.65 Da        Isoelectric Point: 7.0759

>NTDB_id=343629 EPB59_RS00200 WP_055051305.1 46916..47923(+) (cytR) [Vibrio metoecus strain 2011V-1169]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRVAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLSLPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLMVRESAAPPNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=343629 EPB59_RS00200 WP_055051305.1 46916..47923(+) (cytR) [Vibrio metoecus strain 2011V-1169]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGTGTTTCAACCGCGACGGTGTCGCGTGCGTTGATGAACCCTGAGAA
AGTTTCTTCATCGACGCGTAAGCGTGTTGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCGAATTCTTTAGCGCGCAATT
TGCGTCGTAATGAGTCAAAAACCATCGTTGCTATCGTGCCGGATATCTGTGATCCCTACTTTTCTGAGATCATTCGTGGG
ATTGAAGATGCCGCAATGGAGCACGGTTATTTGGTGTTATTGGGTGACAGTGGCCAGCAAAAACGTCGGGAAAACTCCTT
CGTTAATCTGGTGTTTACCAAACAAGCTGACGGGATGCTGCTACTTGGCACGGATTTGCCGTTTGATGTGAGTAAACCGG
AGCAGAAAAACTTGCCACCAATGGTGATGGCATGTGAATTTGCCCCCGAACTTGAATTGCCTACCGTTCACATTGATAAC
CTGACTTCAGCGTTTGAAGCGGTCAACTACTTGACCCAGCTGGGGCATAAGCGTGTGGCACAGATCTCTGGCCCTCAACA
TGCCGCATTGTGTCAATTCCGCCATCAAGGCTACCAACAGGCGCTGCGCCGCGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCGAAAGCGGTGCGTCAGCTCTTATCGTTACCAGAGCAGCCAACCGCG
ATTTTCTGTCACAATGATACGATGGCGATAGGTGCGATTCAGGAAGCGAAGCGACTGGGTTTACGTGTGCCACAAGATCT
GTCGGTTGTCGGTTTTGATGATATTCAGTTTGCACAATACTGCGATCCTCCATTGACGACGATTTCGCAGCCGCGTTATG
AAATTGGCCGCCAAGCCATGCTGATGATGCTAGAACTTCTGCGTGGACACGATGTGCGTGCTGGGTCTCGTTTGTTAGAA
ACCAAACTCATGGTGCGTGAGAGTGCCGCGCCACCCAATAAGAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

98.806

100

0.988
  cytR Vibrio parahaemolyticus RIMD 2210633

90.12

99.701

0.899

Multiple sequence alignment