Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ET951_RS17380 Genome accession   NZ_CP035683
Coordinates   547937..549031 (-) Length   364 a.a.
NCBI ID   WP_154114113.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 542937..554031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS17360 - 543399..543797 (+) 399 WP_005525727.1 YgiW/YdeI family stress tolerance OB fold protein -
  ET951_RS17365 - 544010..544528 (+) 519 WP_000932976.1 hypothetical protein -
  ET951_RS17370 - 544687..545352 (+) 666 WP_154114112.1 flagellar brake protein -
  ET951_RS17375 luxQ 545344..547917 (-) 2574 WP_001026296.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  ET951_RS17380 luxP 547937..549031 (-) 1095 WP_154114113.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ET951_RS17385 traF 549230..550390 (-) 1161 WP_154114114.1 conjugal transfer protein TraF -
  ET951_RS17390 - 550491..550790 (-) 300 WP_154114115.1 GIY-YIG nuclease family protein -
  ET951_RS17395 - 550790..551440 (-) 651 WP_154114116.1 YceH family protein -
  ET951_RS17400 - 551483..551680 (-) 198 WP_001246066.1 hypothetical protein -
  ET951_RS17405 - 551869..552189 (+) 321 WP_001089530.1 DUF496 family protein -
  ET951_RS17410 - 552601..552852 (+) 252 WP_005520676.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41573.36 Da        Isoelectric Point: 6.6177

>NTDB_id=343626 ET951_RS17380 WP_154114113.1 547937..549031(-) (luxP) [Vibrio mimicus strain 2011V-1073]
MKRNILLSLLLTATLFTSATYADSLKGYWHYDEFLTEFPEQQNLTAQLAKTVRDNPIPLSVKQRQPVVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGRQPMMYIGFDHELGALQLAQQYQKIAPKQKPYSVLYFSEGYISEARGDTFIQQMNEHRFLLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELDALAKGDLNLTIMRMNDDTGVAMAE
AIKWDLEEKVVPLVYSGDFEIVTQQDSSKHVEALKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=343626 ET951_RS17380 WP_154114113.1 547937..549031(-) (luxP) [Vibrio mimicus strain 2011V-1073]
ATGAAAAGAAATATACTGCTGTCGCTGCTTCTGACTGCAACGCTCTTCACTTCAGCAACCTATGCTGATTCTTTGAAAGG
GTATTGGCATTATGATGAGTTCCTAACGGAATTCCCCGAGCAGCAGAATCTGACCGCTCAGCTAGCAAAAACAGTACGCG
ATAACCCTATACCACTCAGTGTTAAACAGCGGCAACCCGTCGTGATTTCGGTCGTGTATCCCGGACAACAGATCTCCGAT
TATTGGGTTCGTAATATCAAGGCTTTCGAGAAACGGATGGATGAACTCGGTATCCGTTATCAAATTAATCAAGTTTTTAC
TCGTCCTAATCTCGATACTCGTCAGCAAAGTGTCTCCTTGATGGAAGCACTCAAAAACAAGAGCGATTATCTGATTTTCA
CTTTAGATACCACGCGTCACCGTAAGTTTATTGAGCATGTGTTGCACTCTTCTGAAACCAAGCTGATTTTGCAAAACATC
ACGACCCCCGTAAAAGATTGGCAAGGCCGTCAACCTATGATGTACATCGGCTTCGATCATGAGTTAGGGGCTTTGCAACT
CGCACAGCAGTACCAAAAAATTGCCCCTAAACAAAAACCATACTCCGTTCTCTATTTTTCTGAAGGTTACATCAGTGAAG
CACGGGGCGATACTTTTATTCAGCAGATGAATGAACACCGTTTTCTATTGGCTTCTTCGTATTACACTAAAGCGACCGAA
CAAAGTGGTTACGAGGCGACATTGAACATAGTCAAAAATAATCCAGAGATTGGTTTCATTTATGCCTGTGCAACGGATAT
TGCTTTGGGAGCGGCTCAGGCATTAAAAGAACTTGGCCGACAAGACATTTTACTGAATGGCTGGGGTGGCGGTTCAGCCG
AATTGGATGCTTTGGCCAAAGGCGATCTGAATCTCACTATCATGCGAATGAACGATGATACAGGCGTGGCAATGGCGGAA
GCCATTAAGTGGGATTTGGAAGAGAAAGTCGTACCGCTCGTCTATTCTGGTGATTTTGAAATCGTGACCCAACAAGATTC
ATCAAAACATGTTGAAGCACTGAAAGCCCGCGCTTTCCGTTATTCGGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

83.562

100

0.838

Multiple sequence alignment