Detailed information    

insolico Bioinformatically predicted

Overview


Name   sbcB   Type   Machinery gene
Locus tag   ET951_RS13750 Genome accession   NZ_CP035682
Coordinates   2989702..2991126 (+) Length   474 a.a.
NCBI ID   WP_154113698.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2984702..2996126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS13730 - 2985165..2985950 (-) 786 WP_000718977.1 adenosylcobinamide-GDP ribazoletransferase -
  ET951_RS13735 cobT 2985950..2986975 (-) 1026 WP_154113697.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ET951_RS13740 msrB 2987418..2987867 (-) 450 WP_000935877.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ET951_RS13745 - 2988181..2989554 (+) 1374 WP_000117939.1 L-cystine transporter -
  ET951_RS13750 sbcB 2989702..2991126 (+) 1425 WP_154113698.1 exodeoxyribonuclease I Machinery gene
  ET951_RS13755 - 2991155..2991529 (+) 375 WP_032468633.1 CidA/LrgA family protein -
  ET951_RS13760 - 2991520..2992194 (+) 675 WP_154113699.1 LrgB family protein -
  ET951_RS13765 cdd 2992363..2993250 (+) 888 WP_001246049.1 cytidine deaminase -
  ET951_RS13770 - 2993398..2994273 (+) 876 WP_154113700.1 AEC family transporter -
  ET951_RS13775 purT 2994428..2995603 (+) 1176 WP_192927810.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence


Protein


Download         Length: 474 a.a.        Molecular weight: 54837.14 Da        Isoelectric Point: 5.7743

>NTDB_id=343618 ET951_RS13750 WP_154113698.1 2989702..2991126(+) (sbcB) [Vibrio mimicus strain 2011V-1073]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLPEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFT
SFKLEHLSVVNGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELSVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFTKENNVDNQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=343618 ET951_RS13750 WP_154113698.1 2989702..2991126(+) (sbcB) [Vibrio mimicus strain 2011V-1073]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTGAATCCCGCGAAGGATCGCCCTAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATCATTGGTGAGCCGCTGGTGATTTACTGCCAATTGCCTAATG
ATTATTTACCCGCTCCTGAAGCGGCGCTGATCACCGGAATTACTCCACAGAAAGCGAATAGTTTAGGCTTACCAGAGCCA
GAATTTATCGCCCGCATTCATGCTGAACTCTCCACGCCAAACACCACCAGCTTAGGCTACAACAGCATTCGTTTTGACGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGATTCGTGCTTGCCATGCTTTGCGCCCTGAAGGCATCGAATGGCCAGAGAATGATGAAGGCTTCACT
AGCTTTAAGTTAGAACACCTTTCTGTCGTCAACGGCATTGAACACAGTAACGCACACGATGCGATGGCTGACGTGATTGC
TACCATTGAATTGGCGAAAAAGATCAAAGCCGCACAGCCTAAGTTGTTCGATTATTTCTTCAACATGCGCCACAAACGCA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGTATGCTTGGCCGCGAACGTCAGTAC
ACCAGTTGGATTGTGCCAATTGCTTGGCATCCTACCAACCAAAATGCGGTCATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCTCTGTTTGATCTTGATGCAGAAGCGTTGCAAGCACGTCTCTATACTCGTTATGAAGATTTAGCGCCCGATGAACTAT
CAGTTCCTGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTTGCTCCCGCCAAGACTCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGTGAACAGTGTCTTGCCCATTTGAATGTGATCCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTACCAAGGAAAACAATGTGGATAACCAATTGTATGAAGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACCACATCACCGGATAATCTTGGCAGCCTAGAGATTCAAGTGGCGGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTATCCACATACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGCTGAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAACTCGCTCACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

93.869

99.789

0.937


Multiple sequence alignment