Detailed information
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | ET951_RS13750 | Genome accession | NZ_CP035682 |
| Coordinates | 2989702..2991126 (+) | Length | 474 a.a. |
| NCBI ID | WP_154113698.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain 2011V-1073 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2984702..2996126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ET951_RS13730 | - | 2985165..2985950 (-) | 786 | WP_000718977.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| ET951_RS13735 | cobT | 2985950..2986975 (-) | 1026 | WP_154113697.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| ET951_RS13740 | msrB | 2987418..2987867 (-) | 450 | WP_000935877.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| ET951_RS13745 | - | 2988181..2989554 (+) | 1374 | WP_000117939.1 | L-cystine transporter | - |
| ET951_RS13750 | sbcB | 2989702..2991126 (+) | 1425 | WP_154113698.1 | exodeoxyribonuclease I | Machinery gene |
| ET951_RS13755 | - | 2991155..2991529 (+) | 375 | WP_032468633.1 | CidA/LrgA family protein | - |
| ET951_RS13760 | - | 2991520..2992194 (+) | 675 | WP_154113699.1 | LrgB family protein | - |
| ET951_RS13765 | cdd | 2992363..2993250 (+) | 888 | WP_001246049.1 | cytidine deaminase | - |
| ET951_RS13770 | - | 2993398..2994273 (+) | 876 | WP_154113700.1 | AEC family transporter | - |
| ET951_RS13775 | purT | 2994428..2995603 (+) | 1176 | WP_192927810.1 | phosphoribosylglycinamide formyltransferase 2 | - |
Sequence
Protein
Download Length: 474 a.a. Molecular weight: 54837.14 Da Isoelectric Point: 5.7743
>NTDB_id=343618 ET951_RS13750 WP_154113698.1 2989702..2991126(+) (sbcB) [Vibrio mimicus strain 2011V-1073]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLPEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFT
SFKLEHLSVVNGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELSVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFTKENNVDNQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLPEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFT
SFKLEHLSVVNGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELSVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFTKENNVDNQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH
Nucleotide
Download Length: 1425 bp
>NTDB_id=343618 ET951_RS13750 WP_154113698.1 2989702..2991126(+) (sbcB) [Vibrio mimicus strain 2011V-1073]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTGAATCCCGCGAAGGATCGCCCTAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATCATTGGTGAGCCGCTGGTGATTTACTGCCAATTGCCTAATG
ATTATTTACCCGCTCCTGAAGCGGCGCTGATCACCGGAATTACTCCACAGAAAGCGAATAGTTTAGGCTTACCAGAGCCA
GAATTTATCGCCCGCATTCATGCTGAACTCTCCACGCCAAACACCACCAGCTTAGGCTACAACAGCATTCGTTTTGACGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGATTCGTGCTTGCCATGCTTTGCGCCCTGAAGGCATCGAATGGCCAGAGAATGATGAAGGCTTCACT
AGCTTTAAGTTAGAACACCTTTCTGTCGTCAACGGCATTGAACACAGTAACGCACACGATGCGATGGCTGACGTGATTGC
TACCATTGAATTGGCGAAAAAGATCAAAGCCGCACAGCCTAAGTTGTTCGATTATTTCTTCAACATGCGCCACAAACGCA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGTATGCTTGGCCGCGAACGTCAGTAC
ACCAGTTGGATTGTGCCAATTGCTTGGCATCCTACCAACCAAAATGCGGTCATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCTCTGTTTGATCTTGATGCAGAAGCGTTGCAAGCACGTCTCTATACTCGTTATGAAGATTTAGCGCCCGATGAACTAT
CAGTTCCTGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTTGCTCCCGCCAAGACTCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGTGAACAGTGTCTTGCCCATTTGAATGTGATCCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTACCAAGGAAAACAATGTGGATAACCAATTGTATGAAGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACCACATCACCGGATAATCTTGGCAGCCTAGAGATTCAAGTGGCGGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTATCCACATACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGCTGAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAACTCGCTCACTAA
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTGAATCCCGCGAAGGATCGCCCTAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATCATTGGTGAGCCGCTGGTGATTTACTGCCAATTGCCTAATG
ATTATTTACCCGCTCCTGAAGCGGCGCTGATCACCGGAATTACTCCACAGAAAGCGAATAGTTTAGGCTTACCAGAGCCA
GAATTTATCGCCCGCATTCATGCTGAACTCTCCACGCCAAACACCACCAGCTTAGGCTACAACAGCATTCGTTTTGACGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGATTCGTGCTTGCCATGCTTTGCGCCCTGAAGGCATCGAATGGCCAGAGAATGATGAAGGCTTCACT
AGCTTTAAGTTAGAACACCTTTCTGTCGTCAACGGCATTGAACACAGTAACGCACACGATGCGATGGCTGACGTGATTGC
TACCATTGAATTGGCGAAAAAGATCAAAGCCGCACAGCCTAAGTTGTTCGATTATTTCTTCAACATGCGCCACAAACGCA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGTATGCTTGGCCGCGAACGTCAGTAC
ACCAGTTGGATTGTGCCAATTGCTTGGCATCCTACCAACCAAAATGCGGTCATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCTCTGTTTGATCTTGATGCAGAAGCGTTGCAAGCACGTCTCTATACTCGTTATGAAGATTTAGCGCCCGATGAACTAT
CAGTTCCTGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTTGCTCCCGCCAAGACTCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGTGAACAGTGTCTTGCCCATTTGAATGTGATCCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTACCAAGGAAAACAATGTGGATAACCAATTGTATGAAGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACCACATCACCGGATAATCTTGGCAGCCTAGAGATTCAAGTGGCGGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTATCCACATACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGCTGAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAACTCGCTCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
93.869 |
99.789 |
0.937 |