Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ET951_RS06635 Genome accession   NZ_CP035682
Coordinates   1420470..1421477 (+) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio mimicus strain 2011V-1073     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415470..1426477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS06620 - 1415900..1417177 (-) 1278 WP_154113168.1 malic enzyme-like NAD(P)-binding protein -
  ET951_RS06625 rpmE 1417487..1417705 (-) 219 WP_000643443.1 50S ribosomal protein L31 -
  ET951_RS06630 priA 1417960..1420164 (+) 2205 WP_154113169.1 primosomal protein N' -
  ET951_RS06635 cytR 1420470..1421477 (+) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  ET951_RS06640 - 1421647..1422198 (+) 552 WP_042991485.1 SPOR domain-containing protein -
  ET951_RS06645 hslV 1422341..1422892 (+) 552 WP_000208246.1 ATP-dependent protease subunit HslV -
  ET951_RS06650 hslU 1422935..1424266 (+) 1332 WP_001293363.1 HslU--HslV peptidase ATPase subunit -
  ET951_RS06655 - 1424373..1425290 (+) 918 WP_005512015.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ET951_RS06660 rraA 1425365..1425880 (+) 516 WP_000456240.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=343599 ET951_RS06635 WP_000224452.1 1420470..1421477(+) (cytR) [Vibrio mimicus strain 2011V-1073]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=343599 ET951_RS06635 WP_000224452.1 1420470..1421477(+) (cytR) [Vibrio mimicus strain 2011V-1073]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCCGGAGTCTCAACCGCGACCGTGTCTCGTGCGTTGATGAACCCTGAAAA
AGTCTCCTCATCAACTCGTAAACGAGTGGAAGAGGCGGTGCTGGAAGCGGGTTACTCACCAAATTCTTTAGCGCGCAATT
TGCGCCGCAATGAGTCAAAAACCATCGTTGCTATTGTTCCTGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGACGCGGCGATGGAGCACGGCTATTTGGTGTTGTTGGGTGACAGTGGTCAACAAAAGCGTCGGGAGAATTCCTT
TGTAAACCTTGTGTTTACTAAACAAGCCGATGGCATGTTGCTGCTGGGTACAGATTTACCGTTTGATGTGAGTAAGCCTG
AACAGAAAAATCTGCCGCCTATGGTGATGGCGTGTGAATTTGCTCCTGAGCTTGAATTACCGACGGTGCATATCGATAAC
CTGACTTCTGCATTTGAAGCGGTGAACTATCTGACTCAGCTTGGGCATAAGCGCATTGCGCAGATCTCTGGCCCACAACA
TGCGGCATTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACTATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGCCAGTTACTGGCGTTGCCAGAGCAGCCAACCGCC
ATTTTCTGTCACAATGATACGATGGCGATTGGGGCGATTCAGGAAGCTAAACGACTAGGTCTGCGAGTACCGCAAGATCT
CTCCGTCGTCGGCTTTGATGATATTCAGTTTGCTCAGTACTGTGATCCACCGCTGACCACTATCTCTCAACCTCGTTATG
AAATTGGTCGCCAAGCCATGCTGATGATGTTAGAGCTACTGCGTGGACATGATGTACGTGCAGGGTCTCGTTTGCTTGAA
ACCAAACTCGTGGTACGTGAGAGTGCTGCGCCGCCAAGCAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment