Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ET951_RS03020 Genome accession   NZ_CP035682
Coordinates   669012..670022 (-) Length   336 a.a.
NCBI ID   WP_000116730.1    Uniprot ID   A0A1D8SDR3
Organism   Vibrio mimicus strain 2011V-1073     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 664012..675022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS03010 cysM 665130..666017 (+) 888 WP_154112920.1 cysteine synthase CysM -
  ET951_RS03015 mutS 666347..668935 (+) 2589 WP_154112921.1 DNA mismatch repair protein MutS -
  ET951_RS03020 rpoS 669012..670022 (-) 1011 WP_000116730.1 RNA polymerase sigma factor RpoS Regulator
  ET951_RS03025 nlpD 670096..671031 (-) 936 WP_000189384.1 murein hydrolase activator NlpD -
  ET951_RS03030 - 671031..671657 (-) 627 WP_022577561.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  ET951_RS03035 surE 671650..672402 (-) 753 WP_192927792.1 5'/3'-nucleotidase SurE -
  ET951_RS03040 truD 672404..673489 (-) 1086 WP_154112923.1 tRNA pseudouridine(13) synthase TruD -
  ET951_RS03045 ispF 673519..673995 (-) 477 WP_000619214.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ET951_RS03050 ispD 673992..674690 (-) 699 WP_154112924.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ET951_RS03055 ftsB 674687..674971 (-) 285 WP_001263188.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 38584.40 Da        Isoelectric Point: 4.3159

>NTDB_id=343587 ET951_RS03020 WP_000116730.1 669012..670022(-) (rpoS) [Vibrio mimicus strain 2011V-1073]
MSVSNTVTKVEEFDFEDEALEVLEADDELSSDEELVTAEGASDEVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDKPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSNNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDVN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=343587 ET951_RS03020 WP_000116730.1 669012..670022(-) (rpoS) [Vibrio mimicus strain 2011V-1073]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAGCGGATGA
TGAGCTCTCGAGTGATGAAGAATTAGTGACCGCTGAAGGGGCAAGTGATGAAGTTCGCGAAGAGTTTGATGCTTCTGCGA
AAAGTCTCGATGCCACACAAATGTATCTCAGTGAAATTGGTTTCTCACCTCTACTGACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCTTTACGTGGCGATGAAGCAGCACGTAAACGCATGATTGAAAGTAACTTGCGTTTAGTCGTTAAAATTTC
ACGTCGCTACAGCAATCGTGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAACCTAGGTCTCATTCGTGCGGTTGAAA
AATTCGACCCAGAACGTGGTTTCCGCTTTTCAACTTACGCGACATGGTGGATCCGTCAAACCATCGAACGTGCGCTGATG
AACCAAACTCGCACCATTCGTCTACCGATTCATGTTGTCAAAGAATTGAACATTTACCTGCGTACTGCTCGTGAATTGTC
ACAACGTCTTGACCACGAACCTACGCCAGAAGAAATCGCGCTTGAGCTCGATAAACCGGTTGATGATGTAACGAAGATGC
TGCGTCTCAACGAGCGTATCAGCTCTGTTGATACACCGATTGGTGGCGATGGTGATAAAGCACTGCTGGATATTCTGCCG
GACTCCAATAATGCGGATCCTGAGTTTTCGACTCAAGATGATGACATCCGTGAATCTCTGCTCAATTGGCTTGATGAACT
CAATCCAAAACAGAAAGAAGTTCTTGCTCGTCGTTTTGGTCTGTTGGGTTATGAGCCATCCACCTTGGAAGAAGTGGGAC
GTGAGATCAATCTGACTCGTGAGCGTGTACGCCAAATTCAGGTAGAAGGGTTACGCCGTCTGCGTGAGATCTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAATGTCGAATACGACGTCAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-248)

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8SDR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

97.305

99.405

0.967

Multiple sequence alignment