Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ET951_RS02880 Genome accession   NZ_CP035682
Coordinates   642639..643157 (-) Length   172 a.a.
NCBI ID   WP_001130224.1    Uniprot ID   Q401L3
Organism   Vibrio mimicus strain 2011V-1073     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 637639..648157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS02850 rimM 637718..638272 (-) 555 WP_000061902.1 ribosome maturation factor RimM -
  ET951_RS02855 rpsP 638300..638548 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  ET951_RS02865 ffh 638788..640173 (-) 1386 WP_000462724.1 signal recognition particle protein -
  ET951_RS02870 - 640386..641180 (+) 795 WP_000369274.1 inner membrane protein YpjD -
  ET951_RS02875 - 641263..642537 (+) 1275 WP_000340995.1 HlyC/CorC family transporter -
  ET951_RS02880 luxS 642639..643157 (-) 519 WP_001130224.1 S-ribosylhomocysteine lyase Regulator
  ET951_RS02885 gshA 643211..644785 (-) 1575 WP_154112910.1 glutamate--cysteine ligase -
  ET951_RS02890 - 644897..647752 (-) 2856 WP_154112911.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19005.86 Da        Isoelectric Point: 5.5455

>NTDB_id=343584 ET951_RS02880 WP_001130224.1 642639..643157(-) (luxS) [Vibrio mimicus strain 2011V-1073]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKAIAQKVIAAGISVNRNDDLA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343584 ET951_RS02880 WP_001130224.1 642639..643157(-) (luxS) [Vibrio mimicus strain 2011V-1073]
ATGCCATTATTAGACAGCTTCACCGTCGATCATACTCGTATGAATGCGCCTGCAGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGCGATACCATTACGGTATTTGATTTGCGTTTTACTCTGCCAAACAAAGATATTTTGTCTGAGCGCGGTATTC
ACACTCTGGAGCATCTGTACGCGGGCTTTATGCGTGCTCACCTTAATGGAAGCCAAGTTGAGATTATCGATATTTCGCCT
ATGGGCTGCCGTACTGGCTTCTATATGAGTTTGATCGGTGCTCCAACTGAGCAGCAAGTGGCACAAGCTTGGTTAGCGGC
AATGCAAGATGTGTTGAAAGTGGAAAGCCAAGATAAGATCCCAGAGCTAAACGAATACCAGTGCGGTACAGCAGCGATGC
ATTCTCTGGAAGAAGCCAAAGCGATTGCGCAGAAAGTGATTGCGGCAGGGATTTCGGTTAACCGTAATGATGACTTGGCG
CTGCCTGAGTCAATGCTGAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q401L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

95.93

100

0.959

Multiple sequence alignment