Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F1716_RS07165 Genome accession   NZ_CP045048
Coordinates   1298814..1299308 (+) Length   164 a.a.
NCBI ID   WP_032583788.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1293814..1304308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS07150 (F1716_07205) - 1295200..1296378 (-) 1179 WP_002859276.1 metal-dependent hydrolase -
  F1716_RS07155 (F1716_07210) gpsA 1296388..1297284 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  F1716_RS07160 (F1716_07215) gatB 1297281..1298699 (-) 1419 WP_002869634.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  F1716_RS07165 (F1716_07220) luxS 1298814..1299308 (+) 495 WP_032583788.1 S-ribosylhomocysteine lyase Regulator
  F1716_RS07170 (F1716_07225) - 1299619..1300611 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  F1716_RS07175 (F1716_07230) - 1300622..1301392 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  F1716_RS07180 (F1716_07235) metE 1301404..1303668 (+) 2265 WP_044277889.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.21 Da        Isoelectric Point: 6.6314

>NTDB_id=343573 F1716_RS07165 WP_032583788.1 1298814..1299308(+) (luxS) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=343573 F1716_RS07165 WP_032583788.1 1298814..1299308(+) (luxS) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707