Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EWA66_RS12210 Genome accession   NZ_CP035680
Coordinates   2454690..2456111 (+) Length   473 a.a.
NCBI ID   WP_039444050.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449690..2461111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS12185 cobC 2450707..2451363 (-) 657 WP_039444042.1 alpha-ribazole phosphatase family protein -
  EWA66_RS12190 cobU 2451365..2451904 (-) 540 WP_039444043.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  EWA66_RS12195 - 2451913..2452686 (-) 774 WP_039444045.1 adenosylcobinamide-GDP ribazoletransferase -
  EWA66_RS12200 cobT 2452687..2453715 (-) 1029 WP_039444047.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  EWA66_RS12205 - 2453856..2454554 (+) 699 WP_039444049.1 NAD(P)H-binding protein -
  EWA66_RS12210 sbcB 2454690..2456111 (+) 1422 WP_039444050.1 exodeoxyribonuclease I Machinery gene
  EWA66_RS12215 - 2456160..2456531 (+) 372 WP_039444052.1 CidA/LrgA family protein -
  EWA66_RS12220 - 2456533..2457210 (+) 678 WP_039437001.1 LrgB family protein -
  EWA66_RS12225 cdd 2457492..2458379 (+) 888 WP_039444054.1 cytidine deaminase -
  EWA66_RS12230 purT 2458514..2459689 (+) 1176 WP_039426154.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  EWA66_RS12235 - 2459769..2460422 (-) 654 WP_039444056.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54708.96 Da        Isoelectric Point: 5.2561

>NTDB_id=343567 EWA66_RS12210 WP_039444050.1 2454690..2456111(+) (sbcB) [Vibrio navarrensis strain 08-2462]
MHQDNQPTFFFFDYETWGVSPAKDRPSQFAGVRTDENFNVIGEPLVIYCRLPSDYLPAPEAALITGITPQKAMQEGLSEP
EFISKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGITWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKLKAAQPKLFDYFFNMRHKRKLNALIDIVNMTPLMHVSGMLGRECQY
TSWVVPLAWHPTNNNAVIVIDLAKDPQPLFELSAEQLHERLYTKREDLHELLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLAQIRQHPEVREKLVQLFSIEREFADSDDVDSKLYDGFFSPADRAAMDIIRQTEPNNLAALDITFNDKR
IDPLLFRYRARNYPWTLDESEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKIAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=343567 EWA66_RS12210 WP_039444050.1 2454690..2456111(+) (sbcB) [Vibrio navarrensis strain 08-2462]
ATGCACCAGGATAATCAGCCTACATTCTTCTTTTTTGATTATGAAACTTGGGGAGTAAGCCCCGCTAAAGACCGCCCTTC
CCAGTTTGCGGGGGTACGCACCGACGAAAATTTCAATGTGATTGGCGAGCCGCTGGTTATCTACTGCCGATTGCCAAGCG
ACTATCTCCCTGCACCAGAAGCGGCCTTGATTACCGGCATTACCCCGCAAAAAGCGATGCAAGAGGGGCTGTCTGAGCCC
GAATTTATTAGCAAAATCCATGCAGAGCTGTCAAAACCCAACACCACTAGCCTTGGCTACAACAGCATTCGTTTTGACGA
TGAAGTCACTCGCTATACCTGCTATCGCAACTTCATCGATCCTTACGCTTGGAGCTGGCAAAACGGCAACTCGCGCTGGG
ATCTGCTGGATGTGATGCGCGCTTGTCACGCCCTTCGCCCAGAAGGCATTACTTGGCCGGAAAATGATGAGGGCTTTACC
AGCTTCAAATTGGAGCATCTGTCCGTCGCCAACGGCATAGAACACAGCAACGCGCACGATGCAATGGCCGACGTTATTGC
CACGATTGAGATGGCCAAAAAGCTCAAAGCAGCCCAGCCGAAACTGTTTGATTACTTTTTCAACATGCGCCATAAACGTA
AGCTGAATGCGCTGATTGATATCGTCAACATGACCCCCTTGATGCACGTATCCGGCATGCTTGGCCGTGAATGTCAGTAC
ACCAGTTGGGTAGTGCCTTTGGCTTGGCATCCGACCAATAACAACGCAGTGATCGTGATCGATTTGGCGAAAGATCCACA
GCCACTGTTTGAGCTAAGCGCTGAGCAGTTGCACGAACGCCTTTACACCAAGCGAGAAGATCTTCACGAGCTGCTGCCAG
TGCCAGTGAAATTGGTGCATCTCAATAAATGCCCCATTTTAGCGCCCGCAAAAACGCTGACGGCAGAAAATGCGGCGAAT
ATTGGTATTGACCGCGAGCAGTGTTTGGCCAACTTGGCGCAGATCCGTCAACACCCTGAAGTGCGAGAGAAGTTGGTGCA
ACTTTTTTCCATTGAACGCGAGTTTGCTGATAGTGACGATGTCGACAGTAAATTGTACGACGGTTTCTTCTCACCAGCCG
ATCGCGCTGCGATGGATATTATTCGTCAAACCGAGCCAAACAACCTCGCTGCGCTCGACATCACCTTTAACGACAAGCGC
ATTGATCCTCTGCTGTTTCGTTATCGTGCGCGTAACTATCCGTGGACATTAGATGAGAGCGAACAACGTCGCTGGGCCAA
CCATTGCCGAGAGTACTTCGAAAGTCGTATTGAAGAGTACATGCTCAATTTGGAAAACTTGGTGCATGAGCACGAAAGCG
ATGAAAAGAAAATAGCGATATTGAAATCGGTTTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.932

99.789

0.808

Multiple sequence alignment