Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EWA66_RS08595 Genome accession   NZ_CP035680
Coordinates   1828277..1829695 (+) Length   472 a.a.
NCBI ID   WP_154199830.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823277..1834695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS08580 vceB 1823732..1825267 (+) 1536 WP_039443491.1 multidrug efflux MFS transporter permease subunit VceB -
  EWA66_RS08590 uvrB 1825984..1828014 (+) 2031 WP_039443487.1 excinuclease ABC subunit UvrB -
  EWA66_RS08595 luxO 1828277..1829695 (+) 1419 WP_154199830.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EWA66_RS08600 luxU 1829679..1830026 (+) 348 WP_039443479.1 quorum-sensing phosphorelay protein LuxU -
  EWA66_RS08605 - 1830088..1830975 (-) 888 WP_039443476.1 YvcK family protein -
  EWA66_RS08610 moaA 1831278..1832267 (+) 990 WP_039465521.1 GTP 3',8-cyclase MoaA -
  EWA66_RS08615 moaB 1832341..1832853 (+) 513 WP_039443466.1 molybdenum cofactor biosynthesis protein B -
  EWA66_RS08620 moaC 1832864..1833343 (+) 480 WP_039443463.1 cyclic pyranopterin monophosphate synthase MoaC -
  EWA66_RS08625 moaD 1833340..1833585 (+) 246 WP_039429897.1 molybdopterin synthase sulfur carrier subunit -
  EWA66_RS08630 moaE 1833588..1834049 (+) 462 WP_039443461.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52870.40 Da        Isoelectric Point: 6.1989

>NTDB_id=343564 EWA66_RS08595 WP_154199830.1 1828277..1829695(+) (luxO) [Vibrio navarrensis strain 08-2462]
MQHTTDAPRSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKASH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNEADSPANQNYQGFIGSSQKMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSPQVIDRFNEYEWPGNVRQLQNVLRNIVVLNNGKEITLEMLPPPLNQPLARSE
NRLFKELEPVSVTDIYPLWMTEKMAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQTWNNKEEIRARDGITE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=343564 EWA66_RS08595 WP_154199830.1 1828277..1829695(+) (luxO) [Vibrio navarrensis strain 08-2462]
ATGCAACACACTACTGATGCGCCGCGCTCGCGTTACCTTCTCATGGTGGAAGATACTGCGTCTGTCGCGGCTTTATACCG
ATCTTATCTAACGCCATTGGGTATCGACATTAATATTGTCGGTACTGGACGCGATGCGATTGAAAGTCTCAAACACCGAA
TCCCGGATCTGATCCTGCTTGATTTAAGGCTACCTGATATGACCGGGATGGATGTACTGCACGCAGTGAAAGCCAGTCAT
CCCGATGTCCCGATTATTTTTATGACCGCGCACGGTTCGATAGATACGGCGGTCGAGGCAATGCGACATGGTTCACAAGA
CTTCTTGATTAAACCTTGTGAAGCAGACCGTTTGCGGGTCACAGTCAATAACGCCATTCGTAAAGCCAGCAAACTGAAAA
ATGAAGCCGACAGTCCGGCGAATCAGAACTACCAAGGTTTCATTGGCAGTAGTCAAAAAATGCAGCAGGTTTACCGCACC
ATCGACTCAGCGGCAAGCAGCAAAGCGAGTATTTTCATCACCGGAGAAAGTGGTACGGGGAAAGAAGTCTGTGCAGAGGC
CATTCACGCCGCGAGTCGTCGTGGCGACAAGCCTTTCATCGCGATCAACTGTGCGGCGATTCCCAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTAAAAGGTGCTTTTACCGGCGCAGCGACGGATCGGCAAGGGGCGGCAGAATTAGCCGATGGT
GGTACTTTGTTTCTTGATGAGCTGTGCGAAATGGATTTGGATTTGCAAACCAAGTTGTTGCGCTTTATCCAAACAGGCAC
GTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTCGATGTGCGTTTTGTTTGTGCCACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGTTTGTATGTGATCCCACTGCATCTTCCTCCGCTGCGAGAG
CGGGGAGAGGATGTGATAGAAATCGCCTACTCTTTACTGGGTTACATGTCTCATGAAGAGGGCAAAAACTTTGTACGTTT
CTCACCTCAGGTGATTGACCGCTTTAATGAGTACGAATGGCCTGGCAATGTGCGACAGCTCCAAAACGTACTGCGCAACA
TAGTAGTACTAAACAATGGTAAGGAAATTACCTTGGAGATGTTGCCACCGCCGTTAAATCAACCTCTCGCTCGCAGCGAG
AATCGTTTGTTTAAAGAACTCGAGCCAGTCTCTGTAACAGATATTTACCCGCTGTGGATGACAGAAAAAATGGCGATTGA
GCAGGCGATCAAGGCGTGTGATGGCAATATTCCACGTGCTGCAGGTTACTTGGACGTTAGTCCATCGACTATCTATCGCA
AACTCCAAACTTGGAATAATAAAGAAGAGATCAGGGCCCGTGATGGAATTACTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.313

95.975

0.828

Multiple sequence alignment