Detailed information NTG0343563

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: EWA66_RS06940
• Genome accession: NZ_CP035680
• Coordinates: 1464536..1467925 (-)
• Length: 1129 a.a.
• NCBI ID: WP_039439580.1
• Uniprot ID: -
• Organism: Vibrio navarrensis strain 08-2462
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1459536..1472925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EWA66_RS06925	-	1460005..1461030 (-)	1026	WP_039435873.1	ABC transporter permease	-
EWA66_RS06930	-	1461033..1462019 (-)	987	WP_039430403.1	ABC transporter permease	-
EWA66_RS06935	-	1462186..1463859 (-)	1674	WP_039439578.1	ABC transporter substrate-binding protein	-
EWA66_RS06940	chiS	1464536..1467925 (-)	3390	WP_039439580.1	response regulator	Regulator
EWA66_RS06945	rsmC	1468178..1469200 (-)	1023	WP_039439581.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
EWA66_RS06950	-	1469272..1470357 (-)	1086	WP_039439615.1	AI-2E family transporter	-
EWA66_RS06955	hemL	1470600..1471895 (-)	1296	WP_039439582.1	glutamate-1-semialdehyde 2,1-aminomutase	-
EWA66_RS06960	erpA	1472177..1472518 (+)	342	WP_039439583.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127252.53 Da
• Isoelectric Point: 6.2587

>NTDB_id=343563 EWA66_RS06940 WP_039439580.1 1464536..1467925(-) (chiS) [Vibrio navarrensis strain 08-2462]
MFKFYRKQKFKRLQSTLMTAFLVLSLTPLTIIAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQVMDYFQAQETEVMGFVRS
ELAYASGGRFYGLVNAFKSLGLDIEQARENAQQRYIPGSGDQIKTSILPESSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLIDLDGNVTYSIYKYENFGTNLKTGPYKDTLLGRSFRQLAKDVTEKRKDNEDYTPVLISDFAEEDGKQVAWLGAPI
IQQGYLHSYAMFRLPNNGLTKLVADVSKDAVIHTLLVGSDHQPRTMSTKQDDISQSAEVINKALAGLTSVGTYINGLGEA
TIAAFTPITLKGQTWALVVQLPESEAFARIQQLEKLFVIAMLIAIILVFICSHYLSNFITSPLLKLTWAAERVSAGDLDE
NMINTDRRDEIGRLAVSFERMQRSIRDKIQLIKTQNRELEKSLQLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMIG
IAETLVSGANGPIPGNQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSLDIHKSAVSLASATRLVLELSSHLLGNKTLRI
INQVPNDLAPVSADPQRLEQVLYNLIGNAIKYTSEGKIVISANIVDDKARVQVVDTGQGIPADQLEHIFEPLIQAGQDAG
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASDEEINTTAKMAQYHHFQAPDSNELLSLDQSSLPENP
QGALLVVADDEPVNLRVLESFLRIEGYRVKTASDGPETLALIKQEKPALLLLDIMMPGMSGYQVCHQLRQEFDLAELPII
MLTALNQSEDRVRGFEAGANDYLSKPFNKQELAARIKAHLMASKAEERRLENSRLEAELKQRAMVEASLLETQGRLLEQL
ESAPEAIICIREDKRIRFANEAACKLFKRNLEQLKRSNAEELIAPKYLTVKQPHYCGHIDIYVEDVRQHIETDILKLPAE
SGLDAMFIFNVGGGATASRIHNLETAVEVLSSYAFDGDKEKLQSLKELGGEFTRLADKALGSNQNKQEIMREVLVDVMTH
ALDYWESVTGENKFAFAEKSGLWRVYLDRSTLQTRTLDKYMRIETLPRTPRWRTVLSSIEFILAHCKEQSPERSYIEMQR
DKLQRLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=343563 EWA66_RS06940 WP_039439580.1 1464536..1467925(-) (chiS) [Vibrio navarrensis strain 08-2462]
ATGTTTAAGTTTTACCGGAAACAGAAATTCAAACGTCTGCAAAGTACCCTGATGACGGCCTTTTTGGTGTTGAGTCTGAC
ACCATTAACCATCATTGCGATTTTCTTTTTGCAATCTCATAGCAAAGATCTGCAAGAGCAAAGCACTTCCCACCTCCTCT
CGGTGCGCGATACCAAGCAACAACAGGTGATGGATTATTTTCAGGCACAAGAAACCGAAGTGATGGGTTTTGTCCGTTCA
GAGTTGGCTTATGCCAGTGGCGGGCGTTTTTATGGCCTAGTCAACGCCTTTAAAAGCCTAGGTCTGGATATCGAACAAGC
GCGTGAAAACGCCCAGCAACGCTATATTCCGGGTTCGGGCGATCAGATCAAAACGTCAATCCTGCCTGAATCCAGCAGCT
ATGTCGGGAGTGAACGTTACCGACTGCTGCACAAGCGCTATCACTGGGCCTACTTAGAACTACTCAAGCGCTCCGATTTT
GACGACATCCTGCTCATCGATTTGGACGGCAACGTCACCTACTCCATCTACAAATACGAAAATTTTGGTACTAACCTGAA
AACAGGGCCCTACAAAGACACTTTACTTGGAAGGAGCTTTCGCCAGCTTGCCAAAGACGTTACGGAAAAGCGCAAGGACA
ACGAAGATTACACCCCAGTGCTGATTTCCGATTTTGCCGAGGAAGATGGCAAACAGGTCGCTTGGTTAGGCGCCCCCATC
ATTCAACAAGGCTACTTGCACAGTTATGCGATGTTCCGTTTACCGAACAATGGCTTAACTAAACTGGTTGCCGATGTAAG
CAAAGATGCAGTGATCCATACTTTGCTCGTAGGCAGTGACCACCAACCTCGCACCATGAGTACCAAACAGGACGACATTA
GCCAAAGTGCAGAAGTGATCAACAAAGCATTGGCAGGCCTGACCTCGGTAGGAACCTACATAAATGGTTTAGGCGAAGCA
ACCATTGCCGCATTTACACCGATTACCCTCAAAGGACAAACTTGGGCGCTCGTAGTTCAATTGCCTGAAAGCGAAGCCTT
TGCTCGCATCCAACAATTGGAGAAACTGTTTGTCATCGCCATGCTGATTGCCATCATTCTGGTGTTTATCTGCTCACATT
ATCTGTCCAATTTCATTACCTCTCCGCTGCTTAAACTAACGTGGGCAGCAGAACGAGTCTCTGCTGGCGATCTTGACGAG
AATATGATCAATACAGATCGCCGGGATGAAATCGGCCGCTTGGCGGTTAGCTTTGAACGTATGCAGCGCTCCATTCGCGA
CAAAATTCAGTTAATCAAAACGCAGAACCGGGAATTGGAAAAAAGTCTGCAATTGATCCAAAAGCAAAACGATGAGCTGC
AATTAGCCGATAAACTCAAAGATGAGTTTCTCGCGACCACCTCACACGAGTTGCGCACGCCATTGCATGGCATGATTGGC
ATTGCCGAAACCTTAGTCTCCGGAGCCAATGGTCCGATTCCTGGCAACCAAAAATATCAGCTCGATATCATCATCAAAAG
CGGCCAAAGGCTTGCAAACCTAGTCGACGACCTACTTGATTATCACAAAATGCGCTATGGCAGCTTGGACATTCATAAGT
CGGCGGTCAGTTTGGCCAGTGCCACCCGCTTAGTGCTTGAGCTTTCCAGTCATCTGCTCGGCAATAAAACACTACGAATC
ATCAATCAAGTTCCAAACGATCTCGCCCCCGTGTCCGCCGATCCACAACGCTTGGAGCAGGTGTTGTACAACTTGATTGG
CAACGCGATTAAATACACCAGCGAAGGCAAAATCGTCATCTCCGCCAACATAGTAGACGACAAAGCAAGAGTCCAAGTCG
TGGACACTGGGCAGGGCATTCCAGCAGATCAGCTGGAGCATATTTTTGAACCGTTAATTCAAGCAGGTCAGGATGCAGGT
CGTTATCGGCAAGGGGCGGGTCTTGGCCTCTCGATTAGCCGTCAGTTAATTGAGTTGATGGGCGGCTCTCTGTATGTCAG
CAGCCAGCCAATGGTGGGCACAACCTTTAGTTTTACTTTACCTTTGGCCAGTGATGAGGAGATCAATACCACAGCGAAGA
TGGCGCAATACCATCACTTCCAAGCGCCTGACAGCAATGAATTGCTCTCTCTCGACCAATCATCACTTCCAGAAAATCCG
CAGGGTGCATTGTTGGTGGTGGCTGACGATGAGCCCGTGAATCTACGTGTACTGGAAAGTTTCCTGCGCATTGAAGGTTA
TCGTGTCAAAACCGCTTCCGATGGTCCGGAAACACTCGCATTGATCAAGCAAGAGAAACCGGCGTTGTTGCTACTCGATA
TCATGATGCCGGGCATGAGTGGTTACCAAGTTTGTCATCAGTTACGTCAAGAGTTCGATCTGGCGGAACTGCCCATCATC
ATGCTGACCGCACTCAATCAAAGTGAAGATCGCGTGCGCGGCTTTGAAGCGGGTGCCAACGATTACTTATCAAAACCGTT
TAATAAGCAAGAGCTTGCTGCTCGCATCAAGGCACATCTGATGGCGAGCAAAGCTGAAGAGCGACGCCTGGAAAACAGCC
GCTTGGAAGCCGAGTTAAAACAGCGAGCGATGGTCGAGGCGAGTTTACTTGAGACGCAAGGACGGCTACTGGAGCAACTG
GAATCGGCCCCTGAAGCCATCATCTGTATCCGTGAAGACAAGCGCATTCGTTTTGCCAACGAAGCCGCTTGTAAGCTGTT
TAAACGCAATTTAGAACAGCTCAAACGATCAAATGCAGAAGAGTTAATCGCACCTAAGTACCTAACCGTCAAACAGCCAC
ACTATTGCGGCCACATTGATATTTACGTCGAAGACGTAAGACAGCACATTGAAACCGACATTCTCAAATTGCCCGCAGAG
TCAGGCTTAGATGCCATGTTTATCTTCAACGTCGGTGGCGGCGCAACCGCGTCGCGCATTCACAACTTAGAAACCGCCGT
TGAGGTGCTCTCAAGCTATGCCTTTGATGGCGATAAAGAGAAACTGCAGAGCCTGAAAGAGCTTGGTGGCGAGTTTACTC
GATTAGCTGACAAAGCCTTGGGGAGCAACCAAAACAAGCAAGAGATAATGCGTGAGGTTTTGGTCGATGTGATGACCCAT
GCGTTAGACTACTGGGAATCGGTCACAGGTGAGAACAAGTTTGCCTTTGCCGAGAAAAGCGGCTTGTGGCGCGTCTATCT
CGACCGAAGTACGCTGCAAACCCGAACTCTCGACAAATACATGCGCATTGAGACACTGCCAAGAACGCCTCGCTGGCGCA
CGGTACTTAGCTCTATTGAGTTTATTCTCGCGCATTGTAAAGAGCAGAGCCCAGAGCGTAGCTACATCGAAATGCAGCGC
GATAAGCTGCAACGTTTACTCACCAGCTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• PAS fold (PAS) (877-926)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• Response regulator receiver domain (Response_reg) (726-837)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.262	100	0.763