Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EWA66_RS03070 Genome accession   NZ_CP035680
Coordinates   678827..679402 (+) Length   191 a.a.
NCBI ID   WP_411292403.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673827..684402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS03050 greB 674122..674604 (-) 483 WP_039439048.1 transcription elongation factor GreB -
  EWA66_RS03055 - 674839..677160 (+) 2322 WP_039439054.1 Tex family protein -
  EWA66_RS03060 - 677239..677706 (-) 468 WP_039439056.1 hypothetical protein -
  EWA66_RS03065 bioH 677847..678614 (-) 768 WP_039439059.1 pimeloyl-ACP methyl ester esterase BioH -
  EWA66_RS03070 comF 678827..679402 (+) 576 WP_411292403.1 ComF family protein Machinery gene
  EWA66_RS03075 nfuA 679537..680121 (+) 585 WP_039439063.1 Fe-S biogenesis protein NfuA -
  EWA66_RS03080 nudE 680277..680831 (+) 555 WP_039422660.1 ADP compounds hydrolase NudE -
  EWA66_RS03085 cysQ 680846..681673 (+) 828 WP_039439065.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EWA66_RS03090 - 681756..682517 (-) 762 WP_039439067.1 type II secretion system protein N -
  EWA66_RS03095 - 682519..683010 (-) 492 WP_039439069.1 type II secretion system protein M -
  EWA66_RS03100 gspL 683018..684217 (-) 1200 WP_039439070.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21998.44 Da        Isoelectric Point: 9.8822

>NTDB_id=343542 EWA66_RS03070 WP_411292403.1 678827..679402(+) (comF) [Vibrio navarrensis strain 08-2462]
MPTPRCRHCGLSTLSNVAECGQCLRTPPVWRRLYCLSDYQFPTAWYVNQIKHQRQFRFCQPVATLLAERIQDPAPLLLSV
PMHWRRQWRRGFNQSDLFAAQLAHALGQHYLPDAFRRTTHTPPQQGLNKQQRQRNLAGAFRLNRPIEAKHVAIVDDVVTT
GSTVRQLCQLLLAVGVESIDIYCICRTPEPK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=343542 EWA66_RS03070 WP_411292403.1 678827..679402(+) (comF) [Vibrio navarrensis strain 08-2462]
TTGCCTACGCCTCGTTGTCGCCACTGTGGTTTGTCCACTTTAAGTAACGTCGCCGAATGCGGCCAATGTCTGCGCACCCC
GCCCGTTTGGCGACGCTTGTATTGCCTGAGCGATTACCAATTTCCTACCGCTTGGTATGTCAATCAGATCAAACACCAGC
GCCAATTTCGTTTCTGCCAACCCGTTGCCACGCTCCTTGCCGAGCGCATTCAAGACCCCGCCCCACTGCTGCTCTCTGTC
CCCATGCACTGGCGTCGACAGTGGCGACGTGGCTTTAACCAGAGCGACCTTTTCGCCGCACAGTTGGCCCACGCCCTTGG
CCAGCATTATCTGCCCGACGCCTTTCGCCGCACCACTCACACGCCGCCACAACAAGGGCTCAACAAACAGCAGAGGCAGC
GCAATCTCGCGGGCGCTTTTCGCTTAAATCGGCCAATTGAGGCCAAACACGTGGCGATTGTTGACGACGTCGTCACGACC
GGCAGCACAGTGCGACAATTATGCCAATTACTGCTTGCAGTCGGGGTGGAAAGCATTGATATTTATTGCATCTGCCGCAC
TCCTGAGCCGAAGTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(98-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

62.032

97.906

0.607
  comF Vibrio campbellii strain DS40M4

52.332

100

0.529

Multiple sequence alignment