Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EWA66_RS02410 Genome accession   NZ_CP035680
Coordinates   520475..521482 (+) Length   335 a.a.
NCBI ID   WP_039440756.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 515475..526482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS02390 metJ 515582..515899 (+) 318 WP_039422980.1 met regulon transcriptional regulator MetJ -
  EWA66_RS02395 - 516027..517304 (-) 1278 WP_039440761.1 malic enzyme-like NAD(P)-binding protein -
  EWA66_RS02400 rpmE 517590..517811 (-) 222 WP_039422972.1 50S ribosomal protein L31 -
  EWA66_RS02405 priA 518073..520273 (+) 2201 Protein_442 primosomal protein N' -
  EWA66_RS02410 cytR 520475..521482 (+) 1008 WP_039440756.1 DNA-binding transcriptional regulator CytR Regulator
  EWA66_RS02415 - 521884..522429 (+) 546 WP_039422963.1 SPOR domain-containing protein -
  EWA66_RS02420 hslV 522585..523139 (+) 555 WP_039422960.1 ATP-dependent protease subunit HslV -
  EWA66_RS02425 hslU 523165..524496 (+) 1332 WP_039422957.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36830.32 Da        Isoelectric Point: 5.4528

>NTDB_id=343540 EWA66_RS02410 WP_039440756.1 520475..521482(+) (cytR) [Vibrio navarrensis strain 08-2462]
MATMKDVAQLAGVSTATVSRALMNPEKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFTEIIRG
IEDAAMEQGYLVLLGDSGQQKRRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPSSAALCQFRQQGYQQALRRAGITMNPDYCAEAEFSFAGGTEAIRQLLELPEPPTA
VFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEVLKGHEIHSGSRLLE
TQLVIRGSAAPPRVR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=343540 EWA66_RS02410 WP_039440756.1 520475..521482(+) (cytR) [Vibrio navarrensis strain 08-2462]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCTGGTGTCTCGACCGCCACGGTCTCAAGAGCACTAATGAATCCCGAAAA
AGTGTCGGCCACCACCAGAAAACGGGTGGAAGACGCGGTTTTAGAGGCTGGATATTCACCAAACTCGCTTGCAAGAAATT
TACGTCGGAATGAATCAAAAACCATAGTAACGATTGTCCCAGACATCTGCGACCCCTACTTTACCGAGATTATTCGCGGT
ATCGAAGACGCAGCGATGGAGCAAGGCTACTTAGTTTTACTGGGTGACAGTGGTCAGCAAAAGCGGCGCGAAAGCTCGTT
TGTCAACCTTGTCTTCACCAAACAAGCCGATGGTATGTTGCTGCTTGGCACCGATCTACCGTTTGATGTCAGCAAACCGG
AACAGAAAAACCTACCACCGATGGTGATGGCGTGCGAGTTCGCCCCTGAGCTCGAACTACCCACCGTGCACATCGACAAC
CTAACCTCGGCGTTTGAAGCCGTGAACTACTTAACCCAGCTTGGGCATAAACGCATCGCGCAAATCTCCGGCCCATCGTC
TGCGGCGCTATGTCAGTTCCGTCAGCAAGGCTATCAACAAGCGCTACGACGCGCTGGCATCACCATGAACCCGGATTACT
GCGCGGAAGCCGAGTTCTCGTTCGCCGGCGGTACAGAGGCCATTCGTCAGTTGTTAGAGTTACCTGAACCGCCGACAGCC
GTATTCTGCCACTGCGACACCATGGCGATTGGCGCTATTCAAGAAGCGAAAAAACTGGGCCTGCGCGTGCCGCAAGATCT
CTCCGTGGTCGGTTTTGACGATATTCAATTTGCCCAGTACTGCGATCCCCCTTTGACCACCATCTCTCAGCCGCGCTATG
AGATTGGCCGTCAGGCCATGCTGATGATGCTTGAAGTGCTCAAAGGGCATGAGATCCACAGTGGCTCTCGCCTGCTCGAA
ACGCAACTGGTGATCCGTGGCAGCGCCGCGCCACCAAGAGTGCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

90.991

99.403

0.904
  cytR Vibrio cholerae C6706

89.458

99.104

0.887

Multiple sequence alignment