Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   F9C43_RS28310 Genome accession   NZ_CP045002
Coordinates   6089265..6089861 (-) Length   198 a.a.
NCBI ID   WP_031671448.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAG5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6084265..6094861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9C43_RS28290 (F9C43_28960) aroK 6085396..6085914 (-) 519 WP_003095833.1 shikimate kinase AroK -
  F9C43_RS28295 (F9C43_28965) pilQ 6085926..6088070 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  F9C43_RS28300 (F9C43_28970) comL/pilP 6088124..6088648 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  F9C43_RS28305 (F9C43_28975) pilO 6088645..6089268 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  F9C43_RS28310 (F9C43_28980) pilN 6089265..6089861 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  F9C43_RS28315 (F9C43_28985) pilM 6089861..6090917 (-) 1057 Protein_5592 type IV pilus assembly protein PilM -
  F9C43_RS28320 (F9C43_28990) - 6091102..6093573 (+) 2472 WP_165567208.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22183.52 Da        Isoelectric Point: 10.0895

>NTDB_id=343528 F9C43_RS28310 WP_031671448.1 6089265..6089861(-) (pilN) [Pseudomonas aeruginosa strain PAG5]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPALNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=343528 F9C43_RS28310 WP_031671448.1 6089265..6089861(-) (pilN) [Pseudomonas aeruginosa strain PAG5]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGGCCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369