Detailed information NTG0343465

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F9C43_RS06795
• Genome accession: NZ_CP045002
• Coordinates: 1447559..1448563 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAG5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1442559..1453563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F9C43_RS06765 (F9C43_06905)	fghA	1442651..1443502 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
F9C43_RS06770 (F9C43_06910)	ispF	1443573..1444046 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F9C43_RS06775 (F9C43_06915)	truD	1444043..1445110 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
F9C43_RS06780 (F9C43_06920)	surE	1445098..1445847 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
F9C43_RS06785 (F9C43_06925)	-	1445880..1446515 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
F9C43_RS06790 (F9C43_06930)	-	1446561..1447454 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
F9C43_RS06795 (F9C43_06935)	rpoS	1447559..1448563 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
F9C43_RS06800 (F9C43_06940)	fdxA	1448989..1449312 (-)	324	WP_003092272.1	ferredoxin FdxA	-
F9C43_RS06805 (F9C43_06945)	mutS	1449379..1451946 (-)	2568	WP_079384482.1	DNA mismatch repair protein MutS	-
F9C43_RS06810 (F9C43_06955)	-	1452072..1453079 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=343465 F9C43_RS06795 WP_003113871.1 1447559..1448563(+) (rpoS) [Pseudomonas aeruginosa strain PAG5]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=343465 F9C43_RS06795 WP_003113871.1 1447559..1448563(+) (rpoS) [Pseudomonas aeruginosa strain PAG5]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGATGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653