Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   F7R97_RS15440 Genome accession   NZ_CP044517
Coordinates   3251275..3251790 (+) Length   171 a.a.
NCBI ID   WP_000477147.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 31FS3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3246275..3256790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R97_RS15420 (F7R97_15605) - 3246595..3248055 (+) 1461 WP_140952221.1 amino acid permease -
  F7R97_RS15425 (F7R97_15610) - 3248332..3249537 (+) 1206 WP_032008932.1 RtcB family protein -
  F7R97_RS15430 - 3249556..3249699 (+) 144 WP_162138624.1 hypothetical protein -
  F7R97_RS15435 (F7R97_15615) omp38 3249823..3250893 (-) 1071 WP_000777875.1 outer membrane protein Omp38 -
  F7R97_RS15440 (F7R97_15620) fimT 3251275..3251790 (+) 516 WP_000477147.1 GspH/FimT family pseudopilin Machinery gene
  F7R97_RS15445 (F7R97_15625) - 3251899..3253074 (+) 1176 WP_017816418.1 thiolase family protein -
  F7R97_RS15450 (F7R97_15630) - 3253201..3253644 (+) 444 WP_001176580.1 VOC family protein -
  F7R97_RS15455 (F7R97_15635) - 3253687..3254040 (-) 354 WP_000457783.1 DMT family transporter -
  F7R97_RS15460 (F7R97_15640) - 3254123..3254608 (-) 486 WP_000935252.1 DUF934 domain-containing protein -
  F7R97_RS15465 (F7R97_15645) - 3254601..3256244 (-) 1644 WP_179007466.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19587.81 Da        Isoelectric Point: 8.4960

>NTDB_id=343346 F7R97_RS15440 WP_000477147.1 3251275..3251790(+) (fimT) [Acinetobacter baumannii strain 31FS3-2]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=343346 F7R97_RS15440 WP_000477147.1 3251275..3251790(+) (fimT) [Acinetobacter baumannii strain 31FS3-2]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGCCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCCATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGAGCTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421