Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   F7R97_RS15300 Genome accession   NZ_CP044517
Coordinates   3222171..3222533 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain 31FS3-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3217171..3227533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R97_RS15290 (F7R97_15475) - 3219449..3221527 (-) 2079 WP_140952197.1 methyl-accepting chemotaxis protein -
  F7R97_RS15295 (F7R97_15480) - 3221574..3222110 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  F7R97_RS15300 (F7R97_15485) pilH 3222171..3222533 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  F7R97_RS15305 (F7R97_15490) pilG 3222557..3222940 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  F7R97_RS15310 (F7R97_15495) - 3223223..3223861 (+) 639 WP_001985941.1 hypothetical protein -
  F7R97_RS15315 (F7R97_15500) - 3223921..3225039 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=343344 F7R97_RS15300 WP_000101096.1 3222171..3222533(-) (pilH) [Acinetobacter baumannii strain 31FS3-2]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=343344 F7R97_RS15300 WP_000101096.1 3222171..3222533(-) (pilH) [Acinetobacter baumannii strain 31FS3-2]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTACTAATGGATGTAG
TCATGCCAGGTGTAAATGGTTTCCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392