Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   F8M43_RS19200 Genome accession   NZ_CP044498
Coordinates   3677574..3678707 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain ms-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3672574..3683707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS19160 ywnA 3672742..3673143 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  F8M43_RS19165 ureC 3673278..3674987 (-) 1710 WP_029726053.1 urease subunit alpha -
  F8M43_RS19170 ureB 3674984..3675358 (-) 375 WP_015251023.1 urease subunit beta -
  F8M43_RS19175 ureA 3675355..3675672 (-) 318 WP_003227724.1 urease subunit gamma -
  F8M43_RS19180 - 3675863..3676023 (-) 161 Protein_3705 hypothetical protein -
  F8M43_RS21905 - 3676295..3676463 (-) 169 Protein_3706 urea ABC transporter substrate-binding protein -
  F8M43_RS19190 csbD 3676678..3676866 (-) 189 WP_003227718.1 stress response protein CsbD -
  F8M43_RS19195 - 3676939..3677418 (-) 480 WP_003244390.1 hypothetical protein -
  F8M43_RS19200 rapC 3677574..3678707 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  F8M43_RS19205 moaA 3678899..3679924 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  F8M43_RS19210 fdhD 3679940..3680728 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  F8M43_RS19215 - 3680975..3681136 (-) 162 WP_003227706.1 hypothetical protein -
  F8M43_RS19220 ywmD 3681231..3681905 (-) 675 WP_029726055.1 VWA domain-containing protein -
  F8M43_RS19225 - 3681958..3682098 (-) 141 WP_003227702.1 hypothetical protein -
  F8M43_RS19230 ywmC 3682229..3682912 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=343274 F8M43_RS19200 WP_003227715.1 3677574..3678707(-) (rapC) [Bacillus subtilis strain ms-2]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=343274 F8M43_RS19200 WP_003227715.1 3677574..3678707(-) (rapC) [Bacillus subtilis strain ms-2]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424