Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   F8M43_RS13280 Genome accession   NZ_CP044498
Coordinates   2548057..2549184 (+) Length   375 a.a.
NCBI ID   WP_015714307.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2543057..2554184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS13250 - 2543493..2544086 (-) 594 WP_015714302.1 TetR/AcrR family transcriptional regulator -
  F8M43_RS13255 - 2544244..2545239 (+) 996 WP_015714303.1 acryloyl-CoA reductase -
  F8M43_RS13260 - 2545522..2545662 (+) 141 WP_231940260.1 DUF255 domain-containing protein -
  F8M43_RS21740 - 2545770..2546162 (-) 393 WP_230488262.1 hypothetical protein -
  F8M43_RS21745 - 2546089..2546601 (+) 513 WP_231940259.1 hypothetical protein -
  F8M43_RS13270 - 2546660..2547007 (-) 348 WP_015714305.1 S-Ena type endospore appendage -
  F8M43_RS13275 - 2547084..2547749 (-) 666 WP_015714306.1 CotZ-related putative spore coat protein -
  F8M43_RS13280 rapC 2548057..2549184 (+) 1128 WP_015714307.1 response regulator aspartate phosphatase RapE Regulator
  F8M43_RS13285 phrE 2549174..2549308 (+) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  F8M43_RS13290 - 2549418..2549576 (+) 159 WP_003245945.1 hypothetical protein -
  F8M43_RS13295 yqcG 2549946..2551541 (+) 1596 WP_068947614.1 LXG family T7SS effector endonuclease toxin YqcG -
  F8M43_RS13300 yqcF 2551556..2552134 (+) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  F8M43_RS13305 - 2552252..2552398 (+) 147 WP_009967791.1 hypothetical protein -
  F8M43_RS13310 - 2552395..2552757 (-) 363 WP_003229947.1 hypothetical protein -
  F8M43_RS13315 - 2552773..2553252 (-) 480 WP_004399085.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44640.47 Da        Isoelectric Point: 7.5547

>NTDB_id=343238 F8M43_RS13280 WP_015714307.1 2548057..2549184(+) (rapC) [Bacillus subtilis strain ms-2]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTMPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=343238 F8M43_RS13280 WP_015714307.1 2548057..2549184(+) (rapC) [Bacillus subtilis strain ms-2]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TAATGGCCTTCCGCCATAAAATCATGTTGGAATACACGATGCCATCCGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATCGAAGGGCATAAGAAGAAGCTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATATAACATCTATAAAAAACACGAGCTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATTGCCGGTAACTA
TGATGACCTTGAAAATCATGAGAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384