Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   F8M43_RS10725 Genome accession   NZ_CP044498
Coordinates   2111690..2113465 (-) Length   591 a.a.
NCBI ID   WP_029726826.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106690..2118465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS10705 desE 2107074..2108132 (+) 1059 WP_029726828.1 fatty acid desaturase DesE -
  F8M43_RS10710 desK 2108252..2109364 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  F8M43_RS10715 desR 2109383..2109982 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  F8M43_RS10720 walN 2110579..2111442 (-) 864 WP_003231267.1 3D domain-containing protein -
  F8M43_RS10725 recQ 2111690..2113465 (-) 1776 WP_029726826.1 DNA helicase RecQ Machinery gene
  F8M43_RS10740 azoJ 2114029..2114655 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  F8M43_RS10745 stpP 2114807..2115298 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  F8M43_RS10750 - 2115373..2115705 (-) 333 WP_003231257.1 hypothetical protein -
  F8M43_RS10755 - 2115783..2116010 (+) 228 WP_015383862.1 hypothetical protein -
  F8M43_RS10760 yocM 2115997..2116473 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  F8M43_RS10765 - 2116540..2116803 (+) 264 WP_004399338.1 hypothetical protein -
  F8M43_RS10770 - 2116808..2117041 (+) 234 WP_029726825.1 hypothetical protein -
  F8M43_RS10775 yozO 2117128..2117472 (-) 345 WP_003220141.1 PH domain-containing protein -
  F8M43_RS10780 yozC 2117826..2118029 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67326.79 Da        Isoelectric Point: 6.2902

>NTDB_id=343216 F8M43_RS10725 WP_029726826.1 2111690..2113465(-) (recQ) [Bacillus subtilis strain ms-2]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSVCYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=343216 F8M43_RS10725 WP_029726826.1 2111690..2113465(-) (recQ) [Bacillus subtilis strain ms-2]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGGTTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
AGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGGATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACCGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGTCGGTATCACGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCACAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RQC domain (RQC)

(403-507)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.662

100

0.997