Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   F8M43_RS09895 Genome accession   NZ_CP044498
Coordinates   1936924..1937541 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain ms-2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931924..1942541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS09865 yndJ 1932254..1933894 (+) 1641 WP_029726670.1 YndJ family protein -
  F8M43_RS09870 - 1933972..1934286 (+) 315 WP_029726671.1 hypothetical protein -
  F8M43_RS09875 pghL 1934511..1935269 (+) 759 WP_015714006.1 gamma-polyglutamate hydrolase PghL -
  F8M43_RS09880 - 1935296..1935745 (-) 450 WP_003245454.1 YndM family protein -
  F8M43_RS09885 fosM 1935953..1936387 (+) 435 WP_003231604.1 FosM family fosfomycin resistance protein -
  F8M43_RS21725 - 1936296..1936572 (+) 277 Protein_1888 hypothetical protein -
  F8M43_RS09895 dinR/lexA 1936924..1937541 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  F8M43_RS09900 yneA 1937691..1938008 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  F8M43_RS09905 dinL 1938027..1938680 (+) 654 WP_015714011.1 recombinase family protein -
  F8M43_RS09910 ynzC 1938744..1938977 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  F8M43_RS09915 recP/tkt 1939146..1941149 (+) 2004 WP_038427724.1 transketolase Machinery gene
  F8M43_RS09920 sirA 1941302..1941748 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  F8M43_RS09925 yneF 1941834..1942052 (+) 219 WP_003221221.1 YneF family protein -
  F8M43_RS09930 ynzD 1942126..1942299 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=343213 F8M43_RS09895 WP_003238209.1 1936924..1937541(-) (dinR/lexA) [Bacillus subtilis strain ms-2]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=343213 F8M43_RS09895 WP_003238209.1 1936924..1937541(-) (dinR/lexA) [Bacillus subtilis strain ms-2]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GACTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1