Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   F8M43_RS06075 Genome accession   NZ_CP044498
Coordinates   1175351..1176268 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain ms-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170351..1181268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS06060 trpS 1170931..1171923 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  F8M43_RS06065 oppA 1172667..1174304 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  F8M43_RS06070 oppB 1174412..1175347 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  F8M43_RS06075 amiD 1175351..1176268 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  F8M43_RS06080 oppD 1176273..1177349 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  F8M43_RS06085 oppF 1177351..1178268 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  F8M43_RS06090 yjbB 1178375..1179592 (+) 1218 WP_010886478.1 MFS transporter -
  F8M43_RS06095 yjbC 1179756..1180334 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  F8M43_RS06100 spx 1180515..1180910 (+) 396 WP_003245483.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=343183 F8M43_RS06075 WP_003232954.1 1175351..1176268(+) (amiD) [Bacillus subtilis strain ms-2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=343183 F8M43_RS06075 WP_003232954.1 1175351..1176268(+) (amiD) [Bacillus subtilis strain ms-2]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment