Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   F8M43_RS05285 Genome accession   NZ_CP044498
Coordinates   1018914..1021805 (+) Length   963 a.a.
NCBI ID   WP_072692656.1    Uniprot ID   -
Organism   Bacillus subtilis strain ms-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013914..1026805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS05260 yhaR 1014328..1015095 (+) 768 WP_003245167.1 enoyl-CoA hydratase -
  F8M43_RS05265 yhzD 1015116..1015301 (-) 186 WP_003233264.1 YhzD family protein -
  F8M43_RS05270 yhaQ 1015428..1016324 (+) 897 WP_003233262.1 ABC transporter ATP-binding protein -
  F8M43_RS05275 yhaP 1016317..1017576 (+) 1260 WP_029317553.1 ABC transporter permease -
  F8M43_RS05280 yhaO 1017683..1018909 (+) 1227 WP_038427566.1 exonuclease SbcCD subunit D -
  F8M43_RS05285 sbcE 1018914..1021805 (+) 2892 WP_072692656.1 DNA repair/recombination ATPase SbcE Machinery gene
  F8M43_RS05290 yhaM 1021879..1022823 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  F8M43_RS05295 yhaL 1022949..1023161 (+) 213 WP_003233252.1 sporulation protein YhaL -
  F8M43_RS05300 prsA 1023201..1024076 (-) 876 WP_029726316.1 peptidylprolyl isomerase PrsA -
  F8M43_RS05305 yhzE1 1024236..1024322 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  F8M43_RS05310 yhzE2 1024447..1024533 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  F8M43_RS05315 - 1024586..1024768 (-) 183 WP_024571667.1 hypothetical protein -
  F8M43_RS05320 yhaJ 1024876..1025394 (-) 519 WP_015715601.1 DUF3267 domain-containing protein -
  F8M43_RS05325 yhaI 1025602..1025943 (+) 342 WP_009966921.1 YhaI family protein -
  F8M43_RS05330 scoC 1025940..1026551 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111219.21 Da        Isoelectric Point: 6.1033

>NTDB_id=343170 F8M43_RS05285 WP_072692656.1 1018914..1021805(+) (sbcE) [Bacillus subtilis strain ms-2]
MTALRIISLHIYQYGKFSNRTFDFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGEHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQDGSMLPFQLDDSFVHFDQERLKRVLHVLYDLSKGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=343170 F8M43_RS05285 WP_072692656.1 1018914..1021805(+) (sbcE) [Bacillus subtilis strain ms-2]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTGACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGGGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTTAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACACGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTTTCAGGAAAGTCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TAGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGTGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGAGCACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTGAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACATGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGATGGGTCAATGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCAAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

99.169

100

0.992