Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   F8M43_RS02420 Genome accession   NZ_CP044498
Coordinates   474257..474691 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain ms-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469257..479691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS02390 ydaD 469907..470767 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  F8M43_RS02395 lyxE 470783..471286 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  F8M43_RS02400 ydaF 471372..471923 (+) 552 WP_038427389.1 GNAT family protein -
  F8M43_RS02405 ydaG 472001..472423 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  F8M43_RS02410 amj 472929..473738 (+) 810 WP_038427391.1 lipid II flippase Amj -
  F8M43_RS02415 ydzA 473782..474072 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  F8M43_RS02420 lrpC 474257..474691 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  F8M43_RS02425 topB 474756..476939 (+) 2184 WP_038427393.1 DNA topoisomerase III -
  F8M43_RS02430 ephJ 477142..478230 (+) 1089 WP_038427395.1 hypothetical protein -
  F8M43_RS02435 epsK 478211..479062 (+) 852 WP_033883717.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=343159 F8M43_RS02420 WP_003246585.1 474257..474691(+) (lrpC) [Bacillus subtilis strain ms-2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=343159 F8M43_RS02420 WP_003246585.1 474257..474691(+) (lrpC) [Bacillus subtilis strain ms-2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCACCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1