Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   F8M43_RS00330 Genome accession   NZ_CP044498
Coordinates   59645..59875 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain ms-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54645..64875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS00300 ridA 54809..55186 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  F8M43_RS00305 spoVG 55381..55674 (+) 294 WP_003218346.1 septation regulator SpoVG -
  F8M43_RS00310 glmU 55867..57237 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  F8M43_RS00315 prsS 57260..58213 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  F8M43_RS00320 rplYB 58298..58912 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  F8M43_RS00325 pth 59019..59585 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  F8M43_RS00330 subA/fin 59645..59875 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  F8M43_RS00335 mfd 59945..63478 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  F8M43_RS00340 spoVT 63614..64150 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=343142 F8M43_RS00330 WP_003243417.1 59645..59875(+) (subA/fin) [Bacillus subtilis strain ms-2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=343142 F8M43_RS00330 WP_003243417.1 59645..59875(+) (subA/fin) [Bacillus subtilis strain ms-2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1