Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D6D39_RS05665 Genome accession   NZ_CP035547
Coordinates   1177509..1178114 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1172509..1183114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6D39_RS05645 (D6D39_05730) - 1172904..1174664 (-) 1761 WP_000156454.1 Lon protease family protein -
  D6D39_RS05650 (D6D39_05735) matP 1174850..1175302 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  D6D39_RS05655 (D6D39_05740) ompA 1175374..1176426 (-) 1053 WP_001674965.1 porin OmpA -
  D6D39_RS05660 (D6D39_05745) sulA 1176783..1177292 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  D6D39_RS05665 (D6D39_05750) sxy/tfoX 1177509..1178114 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  D6D39_RS05670 (D6D39_05755) yccS 1178101..1180254 (-) 2154 WP_000950880.1 YccS family putative transporter -
  D6D39_RS05675 (D6D39_05760) - 1180273..1180719 (-) 447 WP_001261222.1 YccF domain-containing protein -
  D6D39_RS05680 (D6D39_05765) helD 1180843..1182897 (+) 2055 WP_022630854.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=343135 D6D39_RS05665 WP_001202375.1 1177509..1178114(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=343135 D6D39_RS05665 WP_001202375.1 1177509..1178114(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment