Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F8B64_RS07485 Genome accession   NZ_CP044497
Coordinates   1470780..1472201 (-) Length   473 a.a.
NCBI ID   WP_011962048.1    Uniprot ID   -
Organism   Haemophilus influenzae strain PittGG     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465780..1477201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS07445 (F8B64_07445) - 1466798..1467028 (-) 231 WP_011962056.1 major capsid protein -
  F8B64_RS07450 (F8B64_07450) - 1467047..1467319 (-) 273 WP_011962055.1 hypothetical protein -
  F8B64_RS07455 (F8B64_07455) - 1467405..1467731 (-) 327 WP_005698175.1 DNA-binding protein -
  F8B64_RS07460 (F8B64_07460) - 1467771..1468919 (-) 1149 WP_011962053.1 phage/plasmid replication protein -
  F8B64_RS07465 (F8B64_07465) - 1469072..1469257 (+) 186 WP_011962052.1 hypothetical protein -
  F8B64_RS07470 (F8B64_07470) - 1469254..1469715 (+) 462 WP_011962051.1 hypothetical protein -
  F8B64_RS07475 (F8B64_07475) - 1469904..1470098 (+) 195 WP_011962050.1 YodC family protein -
  F8B64_RS07480 (F8B64_07480) - 1470085..1470372 (-) 288 WP_011962049.1 hypothetical protein -
  F8B64_RS07485 (F8B64_07485) sbcB 1470780..1472201 (-) 1422 WP_011962048.1 exodeoxyribonuclease I Machinery gene
  F8B64_RS07490 (F8B64_07490) - 1472214..1473089 (-) 876 WP_061659708.1 hypothetical protein -
  F8B64_RS07495 (F8B64_07495) - 1473093..1474000 (-) 908 Protein_1423 DUF5655 domain-containing protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54387.62 Da        Isoelectric Point: 5.1962

>NTDB_id=343126 F8B64_RS07485 WP_011962048.1 1470780..1472201(-) (sbcB) [Haemophilus influenzae strain PittGG]
MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQECNEKGLSEPEF
SANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCT
WVAPLSWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPETANR
LGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKR
ILELLFHYRARHFYKTLTRAEQIKWKKYRQNKLEKSAVEFESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLLG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=343126 F8B64_RS07485 WP_011962048.1 1470780..1472201(-) (sbcB) [Haemophilus influenzae strain PittGG]
ATGGCAAAAGATTTCAGCTTTTTTATTTACGATTATGAAAGTTTTGGTGTAAATCCAGCAACAGATCGCCCTGCGCAATT
TGCGGGTATTCGTACAGATGCTGATTTTAATATCATTGGCGAACCAATAATGTTTTATTGTAAACAAACCAACGATTATT
TACCGGCTCCTGAAGCCGTAATGGTCACAGGAATTACGCCGCAAGAATGTAATGAAAAGGGGCTTTCAGAGCCTGAATTC
TCCGCAAATATCTTAGCAGAATTTTCCCAACCCAATACTTGTGTCATGGGTTATAACAATATTCGCTATGATGATGAAAT
GACGCGTTATACGTTTTATCGAAATTTTATTGATCCTTATGAATACAGCTGGAAAAATGGGAATTCACGCTGGGATTTGT
TAGATTTAGTGCGAGCCTGTTATGCCTTGCGTCCAGAAGGGATTAATTGGGCTTATGACGATGATGGAATGCCAAGTTTC
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCTCATGATGCCATGGCGGATGTATATGCAACTAT
TGCTATGGCGAAATTAATTAAAGAAAAACAACCTAAATTATTCCAATATTTCTTTGAAAATCGCGGTAAAAAAGAAATCG
AAAAATTAGTTGATACAGGCACAATGACACCTTTAGTGCATGTTTCTGGAATGCTAGGGAATTATCGTGGAAATTGCACT
TGGGTTGCACCTTTATCTTGGCATCCGACAAACCAAAACGCACTCATTGTTTGTGATTTAACTGGCGATATCGATAATTT
ATTAGCCAAAAGTGCGGATGAATTACGGACAGATTTATATACCAAAAAATCTGAATTAGAAGAAAGAGGAGTTTCATCTG
TTCCGTTAAAGCTTGTGCATATCAATAAATGTCCTATTTTAGCACCAGCTAAAACTTTGTTACCAGAAACAGCAAATCGA
TTGGGTATTGATCGACAATTATGCTTGGATAATCTTGCAAAATTACGAGCATCTTTTGATATTCGTGAAAAAGTGGCAGA
TATTTTTAATGAAGAACGTCAATTTGCATCGAATGATAATGTAGAAACTGAGTTATACAATGGCTTTTTTAGCAATGCTG
ATAAAAATAATATGGCTATTTTACGTAGTTTACCTGCAGAAAAATTATCTGAACATGGTTTAGCTTTTGAAGATAAACGT
ATCCTTGAATTATTGTTCCATTATCGCGCTCGTCATTTTTATAAAACCCTCACACGCGCTGAACAAATTAAATGGAAAAA
ATACCGACAGAATAAACTTGAAAAAAGTGCGGTAGAGTTTGAATCAAGTTTACAACGTTTAGCTGAGGAACATTCAGATA
ATTCTGAAAAACTATCTTTGCTACAACAAGTATATGAATATGGTATAAAATTACTAGGTTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-468)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.15

98.52

0.543