Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F8B64_RS02750 Genome accession   NZ_CP044497
Coordinates   549721..550224 (-) Length   167 a.a.
NCBI ID   WP_012055062.1    Uniprot ID   -
Organism   Haemophilus influenzae strain PittGG     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 544721..555224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS02725 (F8B64_02725) - 544857..545909 (+) 1053 WP_012055065.1 extracellular solute-binding protein -
  F8B64_RS02730 (F8B64_02730) hslU 545979..547313 (-) 1335 WP_074039274.1 HslU--HslV peptidase ATPase subunit -
  F8B64_RS02735 (F8B64_02735) hslV 547324..547851 (-) 528 WP_005652018.1 ATP-dependent protease subunit HslV -
  F8B64_RS02740 (F8B64_02740) aphA 548071..548778 (+) 708 WP_005649426.1 acid phosphatase AphA -
  F8B64_RS02745 (F8B64_02745) - 548825..549621 (-) 797 Protein_515 IS3 family transposase -
  F8B64_RS02750 (F8B64_02750) luxS 549721..550224 (-) 504 WP_012055062.1 S-ribosylhomocysteine lyase Regulator
  F8B64_RS02755 (F8B64_02755) - 550554..551027 (-) 474 WP_005656551.1 YqaA family protein -
  F8B64_RS02760 (F8B64_02760) - 551027..551628 (-) 602 Protein_518 beta-phosphoglucomutase family hydrolase -
  F8B64_RS02765 (F8B64_02765) - 551744..552121 (+) 378 WP_012055061.1 PRD domain-containing protein -
  F8B64_RS02770 (F8B64_02770) rsmG 552259..552870 (+) 612 WP_005652031.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  F8B64_RS02775 (F8B64_02775) - 552996..553370 (+) 375 WP_005662542.1 ATP synthase subunit I -
  F8B64_RS02780 (F8B64_02780) atpB 553407..554195 (+) 789 WP_005629251.1 F0F1 ATP synthase subunit A -
  F8B64_RS02785 (F8B64_02785) atpE 554251..554505 (+) 255 WP_005652035.1 F0F1 ATP synthase subunit C -
  F8B64_RS02790 (F8B64_02790) atpF 554555..555025 (+) 471 WP_005652038.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18512.19 Da        Isoelectric Point: 4.8168

>NTDB_id=343095 F8B64_RS02750 WP_012055062.1 549721..550224(-) (luxS) [Haemophilus influenzae strain PittGG]
MPLLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISP
MGCRTGFYMSLIGTPNEQEVSEAWLASMQDVLGVQDQAAIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLS
LDNSLLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=343095 F8B64_RS02750 WP_012055062.1 549721..550224(-) (luxS) [Haemophilus influenzae strain PittGG]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACAAAAATGAACGCACCTGCAGTACGCATTGCAAAAACGATGCTCAC
GCCAAAAGGCGATAATATTACTGTTTTTGATTTACGTTTTTGTATTCCAAACAAAGAAATTCTTTCCCCAAAAGGCATTC
ATACACTTGAACATTTATTTGCTGGATTTATGCGCGATCATTTAAATGGCGATAGCATAGAAATTATTGATATTTCTCCG
ATGGGATGTCGCACGGGATTTTATATGTCTTTGATTGGCACACCAAATGAACAGGAAGTATCTGAGGCTTGGTTAGCTTC
AATGCAAGATGTTTTAGGTGTACAAGATCAAGCTGCTATTCCAGAATTAAATATCTATCAATGCGGAAGCTATACGGAAC
ATTCCTTAGAAGATGCACACGAAATTGCCAAAAATGTTATCGCACGCGGTATAGGTGTAAATAAAAATGAAGATTTGTCA
CTCGATAATTCCTTATTAAAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.096

99.401

0.737