Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   FSA28_RS07045 Genome accession   NZ_CP044495
Coordinates   1423580..1425784 (-) Length   734 a.a.
NCBI ID   WP_002290990.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1418580..1430784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS07010 (FSA28_1171) - 1418728..1419423 (-) 696 WP_002267182.1 DnaD domain-containing protein -
  FSA28_RS07015 (FSA28_1172) metA 1419433..1420377 (-) 945 WP_002265202.1 homoserine O-acetyltransferase MetA -
  FSA28_RS07020 (FSA28_1173) - 1420481..1420999 (-) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  FSA28_RS07025 - 1421131..1421343 (-) 213 WP_002290984.1 ClbS/DfsB family four-helix bundle protein -
  FSA28_RS10560 - 1421460..1421519 (-) 60 Protein_1313 hypothetical protein -
  FSA28_RS07035 (FSA28_1174) - 1421671..1422303 (-) 633 WP_002290986.1 GyrI-like domain-containing protein -
  FSA28_RS07040 (FSA28_1175) - 1422555..1423454 (-) 900 WP_002290988.1 helix-turn-helix transcriptional regulator -
  FSA28_RS07045 (FSA28_1176) recJ 1423580..1425784 (-) 2205 WP_002290990.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FSA28_RS07050 (FSA28_1177) - 1425781..1426545 (-) 765 WP_002265204.1 SDR family NAD(P)-dependent oxidoreductase -
  FSA28_RS07055 (FSA28_1178) rnz 1426542..1427471 (-) 930 WP_002269425.1 ribonuclease Z -
  FSA28_RS07060 (FSA28_1179) - 1427499..1428134 (-) 636 WP_002270420.1 hypothetical protein -
  FSA28_RS07065 (FSA28_1180) hflX 1428121..1429368 (-) 1248 WP_002270421.1 GTPase HflX -
  FSA28_RS07070 (FSA28_1181) miaA 1429557..1430441 (-) 885 WP_002270422.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FSA28_RS07075 (FSA28_1182) - 1430516..1430692 (+) 177 WP_002263068.1 DUF3042 family protein -

Sequence


Protein


Download         Length: 734 a.a.        Molecular weight: 82384.12 Da        Isoelectric Point: 4.4751

>NTDB_id=343032 FSA28_RS07045 WP_002290990.1 1423580..1425784(-) (recJ) [Streptococcus mutans strain UA140]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGLAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQALNDYIQEHAIDLSQKSALVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRDFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNRIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAQKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=343032 FSA28_RS07045 WP_002290990.1 1423580..1425784(-) (recJ) [Streptococcus mutans strain UA140]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCCTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGCCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTCATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTCGTTCATCC
TGAACATCCAGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAGATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAGCGCGTCGGTCTGCAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACCATTGGTTTCAAGTTAGCACCCCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTCTGGTTGATGAGAATAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCCTTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCCTTTGGAGGCCATGCTGGAGCTGCAGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGCTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGCTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGGATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATTTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTCTTTGATCTCCTTGCCTTTAACTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCACTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATAGGATTAAGCATCAATATTATTTAACAGGATCTGGAACGCGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTACCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTCAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGATTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAGGAAATATATGAATTTTTAAAACGCGATCGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.946

100

0.651

  recJ Bacillus subtilis subsp. subtilis str. 168

37.597

100

0.396