Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EU243_RS16520 Genome accession   NZ_CP035533
Coordinates   3401445..3401729 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain DTU001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3396445..3406729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS16500 (EU243_16765) ade 3396552..3398285 (-) 1734 WP_046559557.1 adenine deaminase -
  EU243_RS16505 (EU243_16770) ktrC 3398434..3399099 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  EU243_RS16510 (EU243_16775) - 3399140..3399967 (-) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  EU243_RS16515 (EU243_16780) - 3399969..3401272 (-) 1304 Protein_3230 ATP-binding protein -
  EU243_RS16520 (EU243_16785) abrB 3401445..3401729 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EU243_RS16525 (EU243_16795) mreBH 3401998..3403005 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  EU243_RS16530 (EU243_16800) - 3403077..3403211 (+) 135 WP_003154559.1 protein YkpC -
  EU243_RS16535 (EU243_16805) - 3403312..3404544 (+) 1233 WP_003154560.1 aminopeptidase -
  EU243_RS16540 (EU243_16810) - 3404574..3405481 (-) 908 Protein_3235 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=343016 EU243_RS16520 WP_003154557.1 3401445..3401729(-) (abrB) [Bacillus velezensis strain DTU001]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=343016 EU243_RS16520 WP_003154557.1 3401445..3401729(-) (abrB) [Bacillus velezensis strain DTU001]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment