Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EU243_RS13195 Genome accession   NZ_CP035533
Coordinates   2604528..2605136 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain DTU001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2599528..2610136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS13175 (EU243_13365) dnaD 2599765..2600463 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  EU243_RS13180 (EU243_13370) nth 2600482..2601141 (+) 660 WP_015388079.1 endonuclease III -
  EU243_RS13185 (EU243_13375) - 2601138..2601629 (+) 492 WP_046559838.1 YpoC family protein -
  EU243_RS13190 (EU243_13380) - 2601706..2604489 (-) 2784 WP_046559837.1 PBP1A family penicillin-binding protein -
  EU243_RS13195 (EU243_13385) recU 2604528..2605136 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  EU243_RS13200 (EU243_13390) - 2605178..2606140 (+) 963 WP_046559836.1 DUF2515 domain-containing protein -
  EU243_RS13205 (EU243_13395) sspM 2606184..2606288 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  EU243_RS13210 (EU243_13400) - 2606494..2606739 (+) 246 WP_003153527.1 DUF5446 family protein -
  EU243_RS13215 (EU243_13405) - 2606785..2607153 (+) 369 WP_003153529.1 YppE family protein -
  EU243_RS13220 (EU243_13410) - 2607192..2607374 (-) 183 WP_003153532.1 YppF family protein -
  EU243_RS13225 (EU243_13415) - 2607560..2607961 (+) 402 WP_048367441.1 YppG family protein -
  EU243_RS13230 (EU243_13420) - 2607991..2608404 (-) 414 WP_003153535.1 hypothetical protein -
  EU243_RS13235 (EU243_13425) - 2608543..2609049 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=343011 EU243_RS13195 WP_003153521.1 2604528..2605136(-) (recU) [Bacillus velezensis strain DTU001]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=343011 EU243_RS13195 WP_003153521.1 2604528..2605136(-) (recU) [Bacillus velezensis strain DTU001]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment