Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FSA28_RS02390 Genome accession   NZ_CP044495
Coordinates   477184..477666 (-) Length   160 a.a.
NCBI ID   WP_002291126.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 472184..482666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS02365 (FSA28_0254) - 472798..473319 (+) 522 WP_002291128.1 DUF1273 domain-containing protein -
  FSA28_RS02370 (FSA28_0255) gpsB 473425..473763 (+) 339 WP_002263050.1 cell division regulator GpsB -
  FSA28_RS02380 (FSA28_0256) - 474213..475367 (+) 1155 WP_002291127.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  FSA28_RS02385 (FSA28_0257) - 475383..477023 (+) 1641 WP_002270120.1 cell division site-positioning protein MapZ family protein -
  FSA28_RS02390 (FSA28_0258) luxS 477184..477666 (-) 483 WP_002291126.1 S-ribosylhomocysteine lyase Regulator
  FSA28_RS02395 (FSA28_0259) - 477811..479418 (+) 1608 WP_002263046.1 ribonuclease Y -
  FSA28_RS02400 (FSA28_0260) gmk 479867..480499 (+) 633 WP_002266356.1 guanylate kinase -
  FSA28_RS02405 (FSA28_0261) rpoZ 480523..480840 (+) 318 WP_002266355.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17964.56 Da        Isoelectric Point: 6.1364

>NTDB_id=342987 FSA28_RS02390 WP_002291126.1 477184..477666(-) (luxS) [Streptococcus mutans strain UA140]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRTDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=342987 FSA28_RS02390 WP_002291126.1 477184..477666(-) (luxS) [Streptococcus mutans strain UA140]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTACTGACGGGATGATTGACTGTTCCCCTTTT
GGATGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGAAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369