Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FSA40_RS06775 Genome accession   NZ_CP044493
Coordinates   1359230..1361434 (-) Length   734 a.a.
NCBI ID   WP_151416366.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1354230..1366434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS06745 (FSA40_1352) - 1354383..1355078 (-) 696 WP_002267182.1 DnaD domain-containing protein -
  FSA40_RS06750 (FSA40_1353) metA 1355088..1356032 (-) 945 WP_002267181.1 homoserine O-succinyltransferase -
  FSA40_RS06755 (FSA40_1354) - 1356136..1356654 (-) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  FSA40_RS06760 (FSA40_1355) - 1356786..1357208 (-) 423 Protein_1263 ClbS/DfsB family four-helix bundle protein -
  FSA40_RS06765 (FSA40_1357) - 1357328..1357960 (-) 633 WP_151416365.1 GyrI-like domain-containing protein -
  FSA40_RS06770 (FSA40_1358) - 1358211..1359110 (-) 900 WP_002299459.1 YafY family protein -
  FSA40_RS06775 (FSA40_1359) recJ 1359230..1361434 (-) 2205 WP_151416366.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FSA40_RS06780 (FSA40_1360) - 1361431..1362195 (-) 765 WP_002266218.1 SDR family oxidoreductase -
  FSA40_RS06785 (FSA40_1361) rnz 1362192..1363121 (-) 930 WP_151416367.1 ribonuclease Z -
  FSA40_RS06790 (FSA40_1362) - 1363149..1363784 (-) 636 WP_002263071.1 cystathionine beta-lyase -
  FSA40_RS06795 (FSA40_1363) hflX 1363771..1365018 (-) 1248 WP_002266221.1 GTPase HflX -
  FSA40_RS06800 (FSA40_1364) miaA 1365207..1366091 (-) 885 WP_151416368.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FSA40_RS06805 (FSA40_1365) - 1366166..1366342 (+) 177 WP_002263068.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82384.17 Da        Isoelectric Point: 4.4948

>NTDB_id=342923 FSA40_RS06775 WP_151416366.1 1359230..1361434(-) (recJ) [Streptococcus mutans strain MD]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGIAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQALNDYIQEHAIDLSQKSALVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRDFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNRIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAKKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=342923 FSA40_RS06775 WP_151416366.1 1359230..1361434(-) (recJ) [Streptococcus mutans strain MD]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCTTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGTCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTTATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTTGTTCATCC
TGAACATCCAGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAGATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAGCGCGTCGGTCTACAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACCATTGGTTTCAAGTTAGCACCTCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTTTGGTTGATGAGAACAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCATTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCTTTTGGAGGCCATGCTGGAGCTGCAGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGCTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGCTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGGATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATCTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTCTTTGATCTCCTTGCCTTTAACTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCACTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATAGGATTAAGCATCAATATTATTTAACAGGATCTGGAACGCGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTACCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTAAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGATTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAGGAAATATATGAATTTTTAAAACGCGATCGCTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-729)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.946

100

0.651
  recJ Bacillus subtilis subsp. subtilis str. 168

37.855

100

0.399