Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HmaOT1_RS05030 Genome accession   NZ_CP035510
Coordinates   684915..686279 (-) Length   454 a.a.
NCBI ID   WP_035713402.1    Uniprot ID   A0A086XYQ8
Organism   Haematobacter massiliensis strain OT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 679915..691279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HmaOT1_RS05000 (HmaOT1_04990) - 680284..680931 (-) 648 WP_035713386.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  HmaOT1_RS05005 (HmaOT1_04995) surE 680935..681723 (-) 789 WP_035713389.1 5'/3'-nucleotidase SurE -
  HmaOT1_RS05010 (HmaOT1_05000) - 681785..681967 (-) 183 WP_035713392.1 hypothetical protein -
  HmaOT1_RS05015 (HmaOT1_05005) - 682094..682735 (-) 642 WP_035713395.1 SDR family oxidoreductase -
  HmaOT1_RS05020 (HmaOT1_05010) purF 682732..684201 (-) 1470 WP_035713398.1 amidophosphoribosyltransferase -
  HmaOT1_RS05025 (HmaOT1_05015) - 684297..684893 (-) 597 WP_035713400.1 CvpA family protein -
  HmaOT1_RS05030 (HmaOT1_05020) radA 684915..686279 (-) 1365 WP_035713402.1 DNA repair protein RadA Machinery gene
  HmaOT1_RS05035 (HmaOT1_05025) - 686527..688320 (+) 1794 WP_035713404.1 ABC transporter transmembrane domain-containing protein -
  HmaOT1_RS05040 (HmaOT1_05030) lysM 688401..688838 (+) 438 WP_035713407.1 peptidoglycan-binding protein LysM -
  HmaOT1_RS05045 (HmaOT1_05035) - 688996..690921 (+) 1926 WP_051911313.1 acyl-CoA synthetase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 47101.96 Da        Isoelectric Point: 5.8004

>NTDB_id=342911 HmaOT1_RS05030 WP_035713402.1 684915..686279(-) (radA) [Haematobacter massiliensis strain OT1]
MARAPSHTFACTACGATFPKWSGRCDACGAWNTIVEEAPLSAAPKGLGKVRGRMVPLGDLAAREPPPARTASGMGELDRV
LGGGLVPASAVLVGGDPGIGKSTLLLQAAASFAQAGLSVIYVTGEEAPAQVRMRAERLGLGGAPLRLAAETALRDIIATL
EAEKPDLVIVDSIQTMWSDTVESAPGSVAQVRAAAHELVTFAKRRNTAVIIVGHVTKEGQIAGPRVVEHMVDTVLYFEGE
RGHQFRILRAVKNRFGPSDEIGVFEMTGTGLAEVANPSALFLSERERPSPGSVVFAGIEGTRPLLVEIQALVAPSPPGSA
RRSVVGWDGGRLAMILAVLEARCGIPFGGLDVYLNVAGGLRISEPAADLAVAAALLSAREDAALPPETVVFGEISLSGAL
RPVSQTENRLKEARKLGFSRAIAPARSAESPEGDDGLRGFADLAAFVGETFGAG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=342911 HmaOT1_RS05030 WP_035713402.1 684915..686279(-) (radA) [Haematobacter massiliensis strain OT1]
ATGGCCCGCGCCCCCTCCCACACCTTCGCCTGCACCGCCTGCGGTGCGACCTTTCCGAAATGGTCCGGGCGCTGCGACGC
CTGTGGCGCATGGAACACCATCGTGGAGGAAGCGCCACTCTCCGCCGCGCCGAAAGGATTGGGCAAGGTTCGCGGGCGCA
TGGTGCCCCTGGGCGATCTTGCCGCGCGGGAGCCTCCGCCCGCCCGCACCGCCTCCGGCATGGGAGAACTGGACCGGGTG
CTGGGCGGCGGGCTGGTCCCGGCTTCCGCCGTTCTGGTCGGCGGTGATCCCGGTATCGGCAAATCCACCCTGCTGCTTCA
GGCCGCTGCCAGCTTTGCGCAGGCGGGTCTGTCCGTGATCTATGTCACGGGAGAGGAAGCGCCCGCGCAGGTCAGGATGC
GGGCCGAGCGGCTCGGGCTTGGCGGCGCGCCGCTCAGGCTGGCCGCCGAAACCGCGCTCCGCGACATCATCGCGACGCTG
GAGGCAGAGAAGCCGGACCTCGTCATCGTCGATTCGATCCAGACCATGTGGTCCGACACCGTCGAAAGCGCTCCGGGCTC
GGTGGCGCAGGTTCGGGCGGCGGCGCACGAGCTTGTCACCTTTGCCAAGCGGCGCAACACCGCCGTCATCATCGTGGGCC
ACGTCACCAAGGAGGGGCAGATCGCCGGCCCCCGCGTGGTCGAGCACATGGTCGATACCGTGCTCTATTTCGAGGGGGAA
CGCGGCCATCAGTTCCGCATCCTTCGCGCGGTCAAGAACCGCTTCGGCCCCTCGGACGAGATCGGCGTCTTCGAGATGAC
GGGCACCGGTCTGGCGGAGGTCGCGAACCCCTCCGCCCTGTTCCTGTCGGAACGGGAACGGCCCAGCCCCGGCTCCGTCG
TCTTCGCCGGGATCGAGGGAACGCGGCCCCTGCTGGTGGAGATACAGGCCCTCGTCGCGCCCTCGCCCCCCGGAAGCGCA
CGGCGCAGCGTCGTCGGCTGGGATGGCGGGCGGCTCGCCATGATCCTTGCCGTGCTGGAAGCGCGCTGCGGCATCCCCTT
CGGCGGGCTGGACGTCTATCTGAACGTCGCGGGCGGGTTGCGAATCTCCGAACCGGCCGCGGATCTGGCCGTGGCAGCGG
CGCTTCTTTCCGCGCGGGAGGATGCGGCATTGCCTCCGGAAACCGTAGTTTTCGGCGAGATCAGCCTCTCCGGCGCGCTC
CGGCCCGTCTCCCAGACGGAAAACAGGTTGAAAGAAGCGCGGAAACTTGGTTTTTCACGAGCCATCGCGCCCGCCCGCAG
CGCAGAAAGCCCCGAAGGGGACGACGGGCTGCGTGGTTTCGCCGATCTCGCCGCCTTTGTGGGCGAGACATTCGGCGCAG
GATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-425)

AAA domain (AAA_25)

(80-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A086XYQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.619

100

0.485
  radA Streptococcus pneumoniae Rx1

48.832

94.273

0.46
  radA Streptococcus pneumoniae D39

48.832

94.273

0.46
  radA Streptococcus pneumoniae R6

48.832

94.273

0.46
  radA Streptococcus pneumoniae TIGR4

48.832

94.273

0.46
  radA Streptococcus mitis SK321

48.832

94.273

0.46
  radA Streptococcus mitis NCTC 12261

48.598

94.273

0.458

Multiple sequence alignment