Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   EUB48_RS18080 Genome accession   NZ_CP035503
Coordinates   3748043..3748453 (-) Length   136 a.a.
NCBI ID   WP_142820419.1    Uniprot ID   A0A515DEZ5
Organism   Rhodoferax sediminis strain CHu59-6-5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3743043..3753453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUB48_RS18065 (EUB48_18035) - 3744863..3746968 (-) 2106 WP_244618449.1 methyl-accepting chemotaxis protein -
  EUB48_RS18070 (EUB48_18040) - 3747146..3747676 (-) 531 WP_142820417.1 chemotaxis protein CheW -
  EUB48_RS18075 (EUB48_18045) - 3747691..3748056 (-) 366 WP_142820418.1 response regulator -
  EUB48_RS18080 (EUB48_18050) pilG 3748043..3748453 (-) 411 WP_142820419.1 response regulator Regulator
  EUB48_RS18085 (EUB48_18055) - 3748517..3748690 (-) 174 WP_077564055.1 rubredoxin -
  EUB48_RS18090 (EUB48_18060) thiD 3748786..3749730 (+) 945 WP_142820420.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EUB48_RS18095 (EUB48_18065) hemL 3749714..3751027 (+) 1314 WP_142820421.1 glutamate-1-semialdehyde 2,1-aminomutase -
  EUB48_RS18100 (EUB48_18070) - 3751097..3751975 (+) 879 WP_142820422.1 LysR family transcriptional regulator -
  EUB48_RS18105 (EUB48_18075) - 3752109..3752882 (-) 774 WP_142820423.1 LamB/YcsF family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14836.98 Da        Isoelectric Point: 7.1341

>NTDB_id=342896 EUB48_RS18080 WP_142820419.1 3748043..3748453(-) (pilG) [Rhodoferax sediminis strain CHu59-6-5]
MTTTGSGFKVLVIDDSNTIRRSAEIFLKQGGHDVVLAEDGFDALAKVNDHQPQLIFCDILMPRLDGYQTCAIIKRNARFA
GVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGEARSGVIDAGS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=342896 EUB48_RS18080 WP_142820419.1 3748043..3748453(-) (pilG) [Rhodoferax sediminis strain CHu59-6-5]
ATGACCACGACTGGATCGGGTTTCAAAGTTCTGGTAATCGATGACAGCAACACCATTCGGCGCAGCGCCGAAATCTTTCT
CAAGCAGGGTGGCCACGACGTGGTGCTGGCAGAGGATGGTTTTGATGCGTTGGCCAAGGTCAACGACCATCAACCCCAAC
TGATTTTCTGTGACATCCTGATGCCGCGGCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCAGGTTCGCT
GGCGTTCCGGTGGTCATGCTGTCGTCCAAGGATGGTGTCTTCGACAAGGCGCGCGGCCGCATGGTGGGCTCGCAGGACTA
TCTGACCAAACCATTTACCAAAGACCAGCTGTTGCAAGCCGTGCAACAGTTTGGCGAAGCCCGTTCAGGAGTGATTGATG
CCGGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A515DEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.12

86.029

0.5

Multiple sequence alignment