Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FSA40_RS02300 Genome accession   NZ_CP044493
Coordinates   428152..428634 (-) Length   160 a.a.
NCBI ID   WP_002291126.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 423152..433634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS02275 (FSA40_0446) - 423766..424287 (+) 522 WP_002267943.1 DUF1273 domain-containing protein -
  FSA40_RS02280 (FSA40_0447) gpsB 424393..424731 (+) 339 WP_002263050.1 cell division regulator GpsB -
  FSA40_RS02290 (FSA40_0448) - 425181..426335 (+) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  FSA40_RS02295 (FSA40_0449) - 426351..427991 (+) 1641 WP_002279920.1 cell division site-positioning protein MapZ family protein -
  FSA40_RS02300 (FSA40_0450) luxS 428152..428634 (-) 483 WP_002291126.1 S-ribosylhomocysteine lyase Regulator
  FSA40_RS02305 (FSA40_0451) - 428779..430386 (+) 1608 WP_002263046.1 ribonuclease Y -
  FSA40_RS02310 (FSA40_0453) gmk 430834..431466 (+) 633 WP_002263045.1 guanylate kinase -
  FSA40_RS02315 (FSA40_0454) rpoZ 431490..431807 (+) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17964.56 Da        Isoelectric Point: 6.1364

>NTDB_id=342877 FSA40_RS02300 WP_002291126.1 428152..428634(-) (luxS) [Streptococcus mutans strain MD]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRTDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=342877 FSA40_RS02300 WP_002291126.1 428152..428634(-) (luxS) [Streptococcus mutans strain MD]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTACTGACGGGATGATTGACTGTTCCCCTTTT
GGATGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369