Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FSA31_RS06600 Genome accession   NZ_CP044492
Coordinates   1338799..1341003 (-) Length   734 a.a.
NCBI ID   WP_088723850.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333799..1346003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS06570 (FSA31_1301) - 1333951..1334646 (-) 696 WP_002284325.1 DnaD domain-containing protein -
  FSA31_RS06575 (FSA31_1302) metA 1334656..1335600 (-) 945 WP_002265202.1 homoserine O-succinyltransferase -
  FSA31_RS06580 (FSA31_1303) - 1335704..1336222 (-) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  FSA31_RS06585 - 1336354..1336776 (-) 423 Protein_1234 ClbS/DfsB family four-helix bundle protein -
  FSA31_RS06590 (FSA31_1305) - 1336896..1337528 (-) 633 WP_151416645.1 GyrI-like domain-containing protein -
  FSA31_RS06595 (FSA31_1306) - 1337780..1338679 (-) 900 WP_002266216.1 YafY family protein -
  FSA31_RS06600 (FSA31_1307) recJ 1338799..1341003 (-) 2205 WP_088723850.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FSA31_RS06605 (FSA31_1308) - 1341000..1341764 (-) 765 WP_002265204.1 SDR family oxidoreductase -
  FSA31_RS06610 (FSA31_1309) rnz 1341761..1342690 (-) 930 WP_002269425.1 ribonuclease Z -
  FSA31_RS06615 (FSA31_1310) - 1342718..1343353 (-) 636 WP_002284327.1 hypothetical protein -
  FSA31_RS06620 (FSA31_1311) hflX 1343340..1344587 (-) 1248 WP_002276123.1 GTPase HflX -
  FSA31_RS06625 (FSA31_1312) miaA 1344776..1345660 (-) 885 WP_002284328.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FSA31_RS06630 (FSA31_1313) - 1345735..1345911 (+) 177 WP_002263068.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82411.19 Da        Isoelectric Point: 4.4908

>NTDB_id=342807 FSA31_RS06600 WP_088723850.1 1338799..1341003(-) (recJ) [Streptococcus mutans strain T8]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGIAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSALVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRNFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNRIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAQKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=342807 FSA31_RS06600 WP_088723850.1 1338799..1341003(-) (recJ) [Streptococcus mutans strain T8]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCTTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGCCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTCATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTTGTTCATCC
TGAACATCCAGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAGATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAACGCGTCGGTCTGCAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACCATTGGTTTCAAGTTAGCACCTCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTTTGGTTGATGAGAACAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCATTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCTTTTGGAGGCCATGCTGGAGCTGCAGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGTTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGCTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGAATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATTTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTTTTTGATCTCCTTGCCTTTAACTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCGCTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATAGGATTAAGCATCAATATTATTTAACAGGATCTGGAACGCGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTATCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTCAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGATTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAGGAAATATATGAATTTTTAAAACGCGATCGCTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-729)

RecJ OB domain (RecJ_OB)

(450-556)

DHHA1 domain (DHHA1)

(317-435)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

65.217

100

0.654
  recJ Bacillus subtilis subsp. subtilis str. 168

37.855

100

0.399