Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EUZ85_RS28240 Genome accession   NZ_CP035490
Coordinates   6377750..6379108 (-) Length   452 a.a.
NCBI ID   WP_127973451.1    Uniprot ID   A0AAE6CJE5
Organism   Hahella sp. KA22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6372750..6384108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUZ85_RS28220 (EUZ85_28220) nrdR 6373383..6373892 (-) 510 WP_127973447.1 transcriptional regulator NrdR -
  EUZ85_RS28225 (EUZ85_28225) glyA 6373950..6375206 (-) 1257 WP_127973448.1 serine hydroxymethyltransferase -
  EUZ85_RS28230 (EUZ85_28230) ettA 6375594..6377255 (+) 1662 WP_127973449.1 energy-dependent translational throttle protein EttA -
  EUZ85_RS28235 (EUZ85_28235) - 6377361..6377738 (+) 378 WP_127973450.1 PilZ domain-containing protein -
  EUZ85_RS28240 (EUZ85_28240) radA 6377750..6379108 (-) 1359 WP_127973451.1 DNA repair protein RadA Machinery gene
  EUZ85_RS28245 (EUZ85_28245) hemE 6379141..6380211 (-) 1071 WP_127973452.1 uroporphyrinogen decarboxylase -
  EUZ85_RS28250 (EUZ85_28250) - 6380342..6381760 (-) 1419 WP_011399673.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48575.85 Da        Isoelectric Point: 7.5114

>NTDB_id=342784 EUZ85_RS28240 WP_127973451.1 6377750..6379108(-) (radA) [Hahella sp. KA22]
MAKKQTSYVCTECGADYRKWMGQCIQCGAWNTVSEFRESRAPVKSVARSGFTGQRAQLQSLEEVELVDLPRTSTLSPEFD
RVLGGGIVPGSVVLIGGHPGAGKSTLLLQTTCRLAERHKILYVTGEESIQQIAMRARRLQLNSHGMQVMSETDVESILDT
AREQQPNILVIDSIQVMHMAELQSAPGSVAQVREAAAALTRYAKQSGVALLIVGHVTKDGSLAGPKVLEHMIDASIMLEG
NEDSRFRTLRAIKNRFGAVNELGVFAMLETGLKDVKNPSAIFLNREGHTAAGSIVTVAWEGTRPLLVEIQALVDQGFGAA
PRRLAIGSDPQRLALLLAVLHRHGGLHVGDQDVFINVVGGVKIAETSADLAVLMAISSSFKDRAAPSDWVVFGEVGLSGE
IRPVSSGQERIVEAAKHGFTKAIVPKSNAPKKAPEGMQVIGVSRLQEALELL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=342784 EUZ85_RS28240 WP_127973451.1 6377750..6379108(-) (radA) [Hahella sp. KA22]
ATGGCGAAGAAACAGACCAGTTACGTCTGCACGGAATGTGGCGCGGATTACCGCAAATGGATGGGGCAGTGTATTCAATG
CGGCGCCTGGAATACGGTCAGTGAGTTCCGTGAAAGCCGGGCGCCTGTCAAAAGCGTCGCCCGTAGCGGTTTTACTGGGC
AGCGGGCGCAATTACAGTCTCTGGAAGAGGTCGAACTGGTCGACCTTCCTCGCACTTCTACGCTGAGTCCCGAGTTTGAC
CGTGTGCTTGGAGGCGGTATTGTTCCCGGGTCGGTCGTGCTGATCGGCGGTCATCCTGGCGCAGGCAAAAGTACGCTGCT
GCTACAGACGACCTGTCGACTGGCTGAGCGACACAAAATTCTCTATGTGACTGGGGAAGAATCCATTCAACAAATCGCCA
TGCGCGCACGACGGCTGCAGCTTAACAGCCACGGTATGCAGGTGATGTCGGAGACGGACGTCGAAAGCATTCTCGATACC
GCGCGGGAGCAGCAGCCGAATATTCTCGTGATCGATAGTATTCAGGTCATGCATATGGCGGAATTGCAATCCGCGCCCGG
CAGTGTGGCGCAGGTGCGTGAAGCCGCTGCGGCGCTGACCCGTTACGCCAAGCAGTCCGGCGTTGCTTTGTTGATCGTCG
GCCACGTCACTAAAGACGGTTCTTTGGCGGGACCCAAAGTGCTGGAACATATGATCGACGCTTCCATCATGCTGGAAGGG
AACGAAGACAGCCGTTTTCGAACGTTGCGTGCGATCAAGAATCGGTTTGGGGCAGTGAATGAGCTGGGCGTTTTCGCCAT
GCTGGAGACGGGACTCAAAGACGTTAAGAACCCCAGCGCTATTTTTCTTAATCGTGAGGGACACACCGCTGCGGGCAGTA
TTGTGACCGTCGCCTGGGAAGGCACCCGACCATTGTTGGTGGAAATTCAGGCGTTGGTGGACCAAGGCTTCGGCGCCGCC
CCCAGACGTTTGGCGATAGGTTCGGACCCTCAGCGTTTGGCTCTGTTATTGGCGGTCTTGCATCGTCACGGAGGCTTGCA
CGTGGGGGATCAGGATGTCTTCATTAACGTGGTTGGAGGAGTGAAAATCGCCGAAACCAGTGCGGATTTGGCGGTATTGA
TGGCGATTTCCTCAAGCTTCAAGGATCGAGCGGCGCCGAGCGATTGGGTTGTATTTGGCGAGGTGGGGCTGTCAGGAGAA
ATCCGGCCGGTCAGCAGTGGGCAGGAGCGTATCGTCGAAGCGGCCAAACATGGCTTCACCAAGGCGATTGTTCCCAAGTC
AAACGCACCCAAGAAAGCCCCTGAAGGCATGCAGGTGATTGGCGTTTCCCGTCTCCAGGAGGCCTTGGAACTGCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.903

100

0.48
  radA Streptococcus mitis NCTC 12261

45.676

99.779

0.456
  radA Streptococcus pneumoniae Rx1

45.676

99.779

0.456
  radA Streptococcus pneumoniae D39

45.676

99.779

0.456
  radA Streptococcus pneumoniae R6

45.676

99.779

0.456
  radA Streptococcus pneumoniae TIGR4

45.676

99.779

0.456
  radA Streptococcus mitis SK321

45.676

99.779

0.456

Multiple sequence alignment