Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EPH95_RS18100 Genome accession   NZ_CP035485
Coordinates   3667637..3669919 (+) Length   760 a.a.
NCBI ID   WP_227003978.1    Uniprot ID   -
Organism   Salicibibacter halophilus strain NKC3-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3662637..3674919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPH95_RS18075 (EPH95_18060) - 3663528..3664196 (+) 669 WP_227003977.1 YitT family protein -
  EPH95_RS18080 (EPH95_18065) cymR 3664141..3664560 (+) 420 WP_142091334.1 cysteine metabolism transcriptional regulator CymR -
  EPH95_RS18085 (EPH95_18070) - 3664657..3665817 (+) 1161 WP_142091335.1 cysteine desulfurase family protein -
  EPH95_RS18090 (EPH95_18075) mnmA 3665828..3666946 (+) 1119 WP_142091336.1 tRNA 2-thiouridine(34) synthase MnmA -
  EPH95_RS18095 (EPH95_18080) - 3666948..3667607 (+) 660 WP_160141849.1 tetratricopeptide repeat protein -
  EPH95_RS18100 (EPH95_18085) recD2 3667637..3669919 (+) 2283 WP_227003978.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EPH95_RS18105 (EPH95_18090) - 3669999..3670229 (+) 231 WP_142091338.1 hypothetical protein -
  EPH95_RS19020 - 3670268..3670438 (+) 171 WP_160141850.1 hypothetical protein -
  EPH95_RS18110 (EPH95_18095) - 3670556..3671620 (+) 1065 WP_142091339.1 AI-2E family transporter -
  EPH95_RS18115 (EPH95_18100) putP 3671642..3673153 (-) 1512 WP_142091340.1 sodium/proline symporter PutP -
  EPH95_RS18120 (EPH95_18105) - 3673470..3674381 (-) 912 WP_142091341.1 proline dehydrogenase family protein -

Sequence

Protein


Download         Length: 760 a.a.        Molecular weight: 85618.85 Da        Isoelectric Point: 4.8749

>NTDB_id=342737 EPH95_RS18100 WP_227003978.1 3667637..3669919(+) (recD2) [Salicibibacter halophilus strain NKC3-5]
MMNEEWKASMDKITGTVSHVIFRNEKNGYTVLNIHVDDATPAVDASSISVVGHFPFPPEEDLLTFYGQFHEHERYGRQFN
MELYEPYIPEGKPAVIQYLSSERFPGIGKKTASRVVAELGESAIDKILHQPNLLYDIPDIKRQQADVLTERLMEEQEIAG
VMSRLITYGFGTELATKIIQAYKGETLNVVEKDPYQLVQDIEGIGFQKADALGVQLGIAPTEKKRLRAGLLFSLWQMSQS
VGHVYLPVDFWIEEALKVLNYRNLEVDATMLQKEIVELDEEGTVAVPDERAYILSLFFAEKGLATNVNRLLDTEIQETFA
EDLYLKTLGELEQDFDITYAERQKEAVELALKSPLMILTGGPGTGKTTVIRAIVEMFKRMRGWNQRKEKKLPVLLAAPTG
RAAKRMAEATGLKAFTIHKWLGWRGDEEEFLEHDEENPLEGELLIIDEASMIDLWLANQLFKAIPAGMQVIIVGDEDQLP
SVGPGQVLGDLLRSEKIPAISLSAVYRQAEGSSIIDLAHDLKEAKLSADFTEAKPDRSFITCQGTSMPDVIIQICQKAMD
KGYTARDIQVLAPMYKGTAGIHLLNERLQALFNPPKQGKRSMTYGDVPFRNGDIVLQLVNNPEDNVFNGDRGEIIALLKE
KETEDGKEKLVVNFDGIEVYYEKQDLKQITLAYCSSIHKAQGSEFPIVIVPLSMSYRRMLKRNLLYTAITRARDSLIMVG
EQRAFSLAAETNDQHSRYSHLHIRIQEASTNHENVKEGQY

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=342737 EPH95_RS18100 WP_227003978.1 3667637..3669919(+) (recD2) [Salicibibacter halophilus strain NKC3-5]
ATGATGAACGAGGAATGGAAGGCATCGATGGACAAAATTACCGGCACGGTGAGCCACGTCATTTTTCGGAATGAAAAAAA
CGGCTATACGGTTTTGAATATCCATGTTGATGACGCAACTCCGGCCGTTGATGCCTCCTCCATTTCGGTTGTCGGTCATT
TCCCCTTTCCACCCGAAGAAGATCTGTTGACGTTTTACGGGCAATTTCACGAACATGAACGTTATGGTCGACAGTTCAAC
ATGGAACTTTATGAACCGTATATTCCCGAAGGCAAACCTGCGGTCATCCAGTATTTATCCAGTGAACGTTTCCCCGGCAT
CGGAAAAAAAACCGCTTCCCGTGTCGTTGCTGAACTAGGCGAATCAGCGATTGATAAAATCCTTCATCAGCCCAACCTTT
TGTACGACATTCCTGACATCAAACGTCAACAAGCGGATGTGCTCACCGAGCGATTAATGGAAGAACAGGAGATCGCCGGT
GTGATGAGCCGCTTGATTACATATGGTTTCGGAACGGAATTGGCCACGAAAATCATCCAGGCTTATAAGGGAGAGACGCT
GAACGTTGTGGAAAAAGACCCCTATCAGCTCGTGCAAGACATTGAGGGCATCGGTTTTCAAAAGGCCGATGCGCTTGGTG
TTCAATTAGGCATTGCGCCGACGGAAAAAAAGCGGCTGCGGGCAGGGCTCTTATTTTCGCTGTGGCAAATGTCCCAAAGC
GTCGGCCACGTCTATTTGCCGGTGGATTTTTGGATCGAAGAGGCCTTGAAAGTGCTGAATTATCGAAACCTTGAAGTGGA
CGCAACAATGTTGCAAAAGGAAATTGTCGAACTGGATGAGGAGGGGACGGTTGCTGTTCCGGACGAACGGGCTTACATAT
TATCGCTCTTTTTTGCGGAAAAAGGGTTGGCAACGAACGTGAATCGTTTGTTGGACACGGAGATTCAAGAAACTTTTGCG
GAAGACCTCTATTTGAAAACGTTGGGTGAGCTGGAACAGGATTTTGACATAACGTATGCGGAGCGCCAAAAAGAAGCGGT
AGAGCTCGCTTTAAAATCTCCCCTCATGATTTTGACCGGTGGTCCGGGCACGGGCAAAACAACGGTAATTCGCGCAATTG
TGGAGATGTTCAAGCGCATGCGAGGCTGGAACCAACGAAAAGAAAAAAAGCTCCCCGTTCTACTTGCAGCGCCGACGGGA
AGAGCCGCGAAACGAATGGCAGAAGCCACCGGCTTGAAAGCTTTCACCATTCATAAATGGCTCGGATGGCGCGGCGATGA
AGAGGAATTTCTTGAACACGATGAAGAAAACCCGCTTGAAGGGGAGTTGTTGATCATCGATGAAGCATCCATGATTGATC
TATGGCTCGCGAACCAGCTATTCAAAGCAATACCCGCAGGGATGCAAGTAATTATCGTCGGTGATGAAGACCAATTGCCA
TCCGTAGGGCCAGGACAAGTGCTCGGGGATTTGTTGCGCTCTGAAAAGATTCCAGCAATATCGTTGTCAGCGGTTTACCG
CCAGGCTGAGGGATCCTCGATCATTGATTTGGCTCATGATTTAAAAGAAGCGAAGTTATCCGCGGATTTTACGGAGGCGA
AACCGGATCGGTCGTTCATTACATGTCAGGGAACAAGCATGCCTGACGTTATTATTCAAATATGCCAAAAAGCGATGGAT
AAAGGGTATACCGCGCGTGATATTCAAGTACTTGCACCCATGTATAAAGGAACAGCCGGCATTCATTTGCTGAATGAAAG
GCTGCAAGCCCTTTTTAATCCCCCGAAACAAGGAAAGCGGTCCATGACATATGGCGATGTCCCCTTTCGAAATGGCGATA
TCGTCCTGCAGCTCGTCAATAATCCCGAAGACAATGTTTTTAATGGGGACCGCGGCGAAATCATCGCGCTTCTTAAAGAA
AAAGAAACGGAAGACGGGAAAGAAAAACTTGTCGTTAATTTTGACGGCATTGAAGTTTACTATGAAAAACAGGATTTAAA
ACAAATCACACTCGCTTATTGTTCCTCGATTCATAAAGCCCAAGGGAGTGAATTCCCGATTGTGATCGTCCCGTTATCCA
TGTCATACCGCCGGATGTTAAAAAGAAATTTGCTCTATACCGCAATTACGAGGGCGCGCGACTCGCTAATCATGGTCGGC
GAACAGCGGGCTTTTTCATTGGCTGCCGAGACGAATGATCAACATAGCCGCTATTCCCATTTGCACATTCGTATACAGGA
AGCAAGTACCAATCATGAAAACGTCAAAGAAGGACAATACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-654)

AAA domain (AAA_30)

(339-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.128

98.026

0.482

Multiple sequence alignment