Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   F7V86_RS17390 Genome accession   NZ_CP044444
Coordinates   3459210..3460988 (-) Length   592 a.a.
NCBI ID   WP_017417959.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3454210..3465988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS17360 - 3454316..3454852 (-) 537 WP_007611945.1 DUF420 domain-containing protein -
  F7V86_RS17365 - 3454997..3455779 (-) 783 WP_065180604.1 VLRF1 family aeRF1-type release factor -
  F7V86_RS17370 - 3455968..3456471 (+) 504 WP_394852752.1 hypothetical protein -
  F7V86_RS17375 - 3456537..3457514 (+) 978 WP_029974229.1 S66 peptidase family protein -
  F7V86_RS17380 - 3457546..3457938 (-) 393 WP_017417958.1 hypothetical protein -
  F7V86_RS17385 - 3458105..3458974 (-) 870 WP_007407985.1 3D domain-containing protein -
  F7V86_RS17390 recQ 3459210..3460988 (-) 1779 WP_017417959.1 DNA helicase RecQ Machinery gene
  F7V86_RS17400 - 3461497..3462123 (-) 627 WP_003153791.1 FMN-dependent NADH-azoreductase -
  F7V86_RS17405 - 3462268..3462759 (-) 492 WP_017417961.1 TraR/DksA C4-type zinc finger protein -
  F7V86_RS17410 gerPC 3462842..3463222 (-) 381 WP_014418112.1 spore germination protein GerPC -
  F7V86_RS17415 - 3463315..3463548 (+) 234 WP_014418113.1 hypothetical protein -
  F7V86_RS17420 - 3463535..3464017 (-) 483 WP_003153787.1 Hsp20/alpha crystallin family protein -
  F7V86_RS17425 - 3464088..3464360 (+) 273 WP_014418114.1 hypothetical protein -
  F7V86_RS17430 - 3464357..3464590 (+) 234 WP_003153785.1 hypothetical protein -
  F7V86_RS17435 - 3464635..3464979 (-) 345 WP_003153783.1 PH domain-containing protein -
  F7V86_RS17440 - 3465273..3465413 (-) 141 WP_003153781.1 DUF4025 domain-containing protein -
  F7V86_RS17445 - 3465479..3465682 (-) 204 WP_007407979.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66993.52 Da        Isoelectric Point: 6.4507

>NTDB_id=342718 F7V86_RS17390 WP_017417959.1 3459210..3460988(-) (recQ) [Bacillus amyloliquefaciens strain KC41]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVTEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYDKLKRSGINAGRYHGGMADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVSRKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDQ
DLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=342718 F7V86_RS17390 WP_017417959.1 3459210..3460988(-) (recQ) [Bacillus amyloliquefaciens strain KC41]
ATGCTGGATAAAGCCCAATCCCTTCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTACAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTGCTGTTTGAAGGGACCACAATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACCCAGACAAGCCGTGACATTCATGAGCGCCTGACCGGTTTGAAACAAGG
GGCTTACCGGCTCTTTTACATCACACCGGAGCGTTTGACTTCTTCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATTGACGAAGCTCACTGTATATCGCAATGGGGACATGATTTCAGGCCGAGTTACCGGAATATCGAAATC
CTTTTTAATGAATTAAAAGAACCGCCCGTCATCATCGCATTAACGGCGACGGCTACACCTGAGGTTCATGATGACATCTG
CAAGCAGCTTCATATTAAGAAAGAACAAACTGTATATACCGGTTTTGCCAGAGAGAATTTAACGTTTAAAGTAGTAAAGG
GCGAAAACAAAGATCGGTTTATCGAGCGGTATCTGGAAAAAAATAAACACGAAGCCGGCATTATATATACAGCGACAAGA
AAAGAAACCGACCGTTTATATGATAAATTAAAACGCAGCGGCATCAATGCCGGCCGTTATCACGGCGGAATGGCGGATGA
TGACAGAAAAGACCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTGATGGTAGCTACGTCCGCTTTCGGAATGGGAA
TCGATAAGAGCAACATCAGGTTCGTTTTGCACGCGCAGATTCCGAAAGATATGGAGAGCTATTACCAGGAAGCCGGACGG
GCCGGGCGCGATGGTCTTAACAGCGAGTGTGTGCTCTTATTTTCGCCGCAGGATATTATGGTGCAGCGTTTTTTAATAGA
CCAATCGGCCGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAATGAGGCGGAAGCTTGCGAAGCATGCGGCAATTGCACTGAT
ACAAGGACCGCCCATGATGTCACAAAAGAAGCGCAGATGGTATTATCATGCATCATCAGAATGAATGAGCGCTTCGGAAA
AACGATGGTGGCGCAGGTGCTTAGCGGCTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACTTACG
GCATTATGAAGCATCAATCCGCAGCGGAAATCAGTGATTTTATCGAATTCCTTATTTCAGATGAATATATCAGAATGGCG
GACGGCACATTTCCGACGCTTATGGTCACCCAAAAAGGCAGGGACGTTCTGCTTGGAAAAAGCGCAGTCTCGAGAAAAGA
AGCCTTACAGGCCGCTGCCGTAACTGAAAATGATGAATTATTTGAGCTTCTCCGGCGTCTCCGCAAAGAGATTGCAGCTG
AACAGGGTGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCAGCGAAACTTCCGAAAACAGATCAG
GATCTTCTTTCCGTAAAAGGGGTCGGGGAACAAAAAAGATTGAAATACGGAGCGGTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(519-584)

RQC domain (RQC)

(404-508)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

81.926

100

0.819