Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EPH95_RS07310 Genome accession   NZ_CP035485
Coordinates   1501403..1502356 (-) Length   317 a.a.
NCBI ID   WP_142088669.1    Uniprot ID   A0A514LI95
Organism   Salicibibacter halophilus strain NKC3-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496403..1507356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPH95_RS07285 (EPH95_07280) - 1496485..1497012 (-) 528 WP_142088661.1 HD domain-containing protein -
  EPH95_RS07290 (EPH95_07285) - 1497114..1497545 (-) 432 WP_142088663.1 peptidylprolyl isomerase -
  EPH95_RS07295 (EPH95_07290) abc-f 1497658..1499538 (-) 1881 WP_142088665.1 ribosomal protection-like ABC-F family protein -
  EPH95_RS07300 (EPH95_07295) - 1499654..1500412 (-) 759 WP_142091527.1 ABC transporter ATP-binding protein -
  EPH95_RS07305 (EPH95_07300) - 1500463..1501413 (-) 951 WP_142088667.1 iron chelate uptake ABC transporter family permease subunit -
  EPH95_RS07310 (EPH95_07305) ceuB 1501403..1502356 (-) 954 WP_142088669.1 ABC transporter permease Machinery gene
  EPH95_RS07315 (EPH95_07310) - 1502697..1505345 (+) 2649 WP_142088671.1 S8 family serine peptidase -
  EPH95_RS07320 (EPH95_07315) - 1505495..1506451 (-) 957 WP_142088673.1 nuclear transport factor 2 family protein -
  EPH95_RS07325 (EPH95_07320) - 1506516..1506728 (-) 213 WP_142088675.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34947.13 Da        Isoelectric Point: 9.6684

>NTDB_id=342717 EPH95_RS07310 WP_142088669.1 1501403..1502356(-) (ceuB) [Salicibibacter halophilus strain NKC3-5]
MRIKYLLPLLIVLSITSLFIGVQEISPADIFNLQDEQIQTILISRIPRLMSIIIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAILLFSQAGTLERMFVAMLFALGGTFLFMKILERIRYKNVIFVPLVGLMLGSVVEAITTFFAYQYDLM
QSLSSWMQGSFSLVVRGNYEILYIGIPLVIIAFLFANRFTVAGMGRDFSANLGMNYNRIMNAGLFIVAMITATVVVTIGS
IPFLGLIIPNIVSIMKGDNLKNSLPHTALFGAIFLLACDILGRVIIYPYEVPIGLMVGIIGSAIFLYLLLRRNAHAG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=342717 EPH95_RS07310 WP_142088669.1 1501403..1502356(-) (ceuB) [Salicibibacter halophilus strain NKC3-5]
ATGAGAATAAAATACTTACTGCCACTGCTCATTGTATTATCGATCACATCTCTATTTATCGGCGTTCAGGAGATATCCCC
GGCCGACATTTTTAACCTTCAAGACGAACAGATACAAACCATCCTTATCAGCCGGATCCCCCGATTGATGAGTATTATTA
TTGTCGGAGTAAGCTTGAGTGTTTGCGGGCTGATCATGCAGCAGCTCACACAGAACAAATTTGTTTCTCCCACGACTGCC
GGAACGATGGATTGGGCGCGGCTTGGCATTCTCGTCGCCATCCTCTTGTTCTCGCAAGCGGGTACGTTGGAGCGAATGTT
CGTTGCCATGTTGTTTGCCCTCGGCGGCACATTCCTTTTCATGAAGATTTTGGAACGCATTCGCTATAAAAATGTGATTT
TCGTCCCGCTTGTCGGCTTAATGCTCGGAAGCGTTGTAGAAGCGATTACGACATTTTTTGCCTATCAATATGATTTGATG
CAAAGCCTTTCCTCCTGGATGCAAGGAAGCTTTTCGCTTGTCGTCAGGGGAAATTATGAGATTTTATATATCGGCATTCC
GCTTGTGATTATTGCCTTTTTATTCGCCAACCGCTTTACGGTTGCCGGGATGGGCCGGGATTTTTCAGCCAATTTGGGGA
TGAACTACAATCGGATTATGAACGCAGGGCTATTCATCGTAGCGATGATAACGGCAACGGTTGTCGTTACGATCGGCTCC
ATTCCGTTCTTGGGGTTGATCATTCCGAATATCGTTTCGATCATGAAAGGCGACAATCTAAAAAACAGCCTTCCACATAC
GGCTTTATTTGGAGCCATCTTTTTATTGGCCTGCGATATATTGGGAAGGGTCATTATCTATCCGTATGAGGTGCCGATCG
GGCTTATGGTGGGTATCATTGGCAGCGCCATATTTCTTTACCTTCTCTTAAGGAGAAACGCTCATGCAGGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514LI95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

99.685

0.521

Multiple sequence alignment