Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   F7V86_RS15610 Genome accession   NZ_CP044444
Coordinates   3033164..3033526 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain KC41     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3028164..3038526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS15580 flgD 3029067..3029507 (+) 441 WP_007409782.1 flagellar hook assembly protein FlgD -
  F7V86_RS15585 flgG 3029532..3030308 (+) 777 WP_007409783.1 flagellar basal body rod protein FlgG -
  F7V86_RS15590 - 3030348..3030563 (+) 216 WP_003154243.1 flagellar FlbD family protein -
  F7V86_RS15595 fliL 3030560..3030979 (+) 420 WP_014417773.1 flagellar basal body-associated protein FliL -
  F7V86_RS15600 fliM 3031013..3032011 (+) 999 WP_003154240.1 flagellar motor switch protein FliM -
  F7V86_RS15605 fliY 3032001..3033137 (+) 1137 WP_017417779.1 flagellar motor switch phosphatase FliY -
  F7V86_RS15610 pilH 3033164..3033526 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  F7V86_RS15615 fliZ 3033541..3034194 (+) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  F7V86_RS15620 fliP 3034187..3034852 (+) 666 WP_007409786.1 flagellar type III secretion system pore protein FliP -
  F7V86_RS15625 fliQ 3034867..3035136 (+) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  F7V86_RS15630 fliR 3035143..3035922 (+) 780 WP_017417780.1 flagellar biosynthetic protein FliR -
  F7V86_RS15635 flhB 3035922..3037001 (+) 1080 WP_014417776.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=342707 F7V86_RS15610 WP_003154238.1 3033164..3033526(+) (pilH) [Bacillus amyloliquefaciens strain KC41]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=342707 F7V86_RS15610 WP_003154238.1 3033164..3033526(+) (pilH) [Bacillus amyloliquefaciens strain KC41]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAAGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCGGTCGAAAAATTCAAAGAGCATTCCCCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTCTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTCGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383