Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F7V86_RS15415 Genome accession   NZ_CP044444
Coordinates   2999409..3000398 (+) Length   329 a.a.
NCBI ID   WP_003154301.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2994409..3005398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS15400 acpP 2994606..2994839 (+) 234 WP_003154310.1 acyl carrier protein -
  F7V86_RS15405 rncS 2994978..2995727 (+) 750 WP_014417754.1 ribonuclease III -
  F7V86_RS15410 smc 2995829..2999389 (+) 3561 WP_017417767.1 chromosome segregation protein SMC -
  F7V86_RS15415 pilA 2999409..3000398 (+) 990 WP_003154301.1 signal recognition particle-docking protein FtsY Machinery gene
  F7V86_RS15420 - 3000482..3001252 (+) 771 WP_065180266.1 phosphotransferase family protein -
  F7V86_RS15425 - 3001374..3001706 (+) 333 WP_003154299.1 putative DNA-binding protein -
  F7V86_RS15430 ffh 3001720..3003060 (+) 1341 WP_007409763.1 signal recognition particle protein -
  F7V86_RS15435 rpsP 3003166..3003438 (+) 273 WP_003154296.1 30S ribosomal protein S16 -
  F7V86_RS15440 - 3003438..3003683 (+) 246 WP_007611392.1 KH domain-containing protein -
  F7V86_RS15445 - 3003774..3004160 (+) 387 WP_003154291.1 YlqD family protein -
  F7V86_RS15450 rimM 3004165..3004689 (+) 525 WP_003154290.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36096.28 Da        Isoelectric Point: 5.0098

>NTDB_id=342704 F7V86_RS15415 WP_003154301.1 2999409..3000398(+) (pilA) [Bacillus amyloliquefaciens strain KC41]
MSFFKKLKEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTTVMELIDELKKEV
KLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFR
AGAIEQLEVWGERTGVPVIKQAAGSDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPH
EVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQRFDAESYVYGLF
SDLVEKAED

Nucleotide


Download         Length: 990 bp        

>NTDB_id=342704 F7V86_RS15415 WP_003154301.1 2999409..3000398(+) (pilA) [Bacillus amyloliquefaciens strain KC41]
ATGAGCTTTTTTAAAAAATTAAAAGAGAAAATCACGAAACAGACAGACTCCGTCTCTGAAAAATTTAAAGATGGTCTTGA
AAAAACAAGAAATTCCTTCTCAAATAAAGTGAACGAACTCGTCTCCCGCTACCGGAAAGTCGACGAGGATTTCTTCGAGG
AGCTTGAGGAAGTGCTGATTGGCGCTGACGTAGGTTTTACAACCGTCATGGAGCTGATTGATGAGCTCAAGAAAGAAGTG
AAGCTGAAAAACATCCAGGATCCTCAGGAAGTGCAGTCCGTCATTTCTGAAAAGCTTGTCGACATTTATAACAGCGGTGA
CGAACAGATTTCTGAATTAAATATTCAGGACGGGCGCCTGAACGTTATTCTGCTTGTCGGGGTAAACGGCGTCGGAAAAA
CGACAACGATCGGAAAGCTTGCCCATAAGCTGAAGAATGAAGGCAAATCGGTTGTGCTCGCTGCCGGAGACACCTTCAGA
GCCGGGGCGATTGAACAGCTTGAAGTGTGGGGAGAGCGTACAGGCGTGCCTGTCATTAAGCAGGCTGCCGGAAGCGACCC
TGCGGCGGTTATTTATGATGCCGTACACGCGGCTAAAGCAAGAGGAGCGGATGTGCTGATTTGTGATACGGCCGGCCGCC
TTCAGAATAAAGTTAACTTAATGAAAGAGCTTGAAAAGGTCAAACGCGTCATCGAACGCGAAGTGCCTGAGGCTCCGCAT
GAGGTTCTCCTCGCGCTTGACGCGACGACAGGCCAGAATGCGATGGCGCAGGCGAAAGAATTCTCCAAAGCGACGAATGT
GACGGGTATCGCATTAACGAAGCTTGACGGCACCGCAAAAGGCGGTATCGTCCTGGCGATCCGCAATGAGCTTCACATCC
CCGTGAAACTGGTCGGCCTCGGAGAAAAGGTTGACGATCTCCAGCGGTTTGATGCAGAATCTTACGTATACGGTCTCTTT
TCGGATTTAGTTGAAAAAGCCGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(121-320)

SRP54-type protein, helical bundle domain (SRP54_N)

(33-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.333

91.185

0.413

Multiple sequence alignment