Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   F7V86_RS13670 Genome accession   NZ_CP044444
Coordinates   2614293..2614958 (+) Length   221 a.a.
NCBI ID   WP_025649634.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2609293..2619958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS13645 - 2609631..2610989 (+) 1359 WP_017417588.1 HAMP domain-containing sensor histidine kinase -
  F7V86_RS13650 - 2611109..2612044 (+) 936 WP_017417589.1 ABC transporter ATP-binding protein -
  F7V86_RS13655 - 2612025..2612756 (+) 732 WP_017417590.1 ABC transporter permease -
  F7V86_RS13660 - 2612774..2612965 (+) 192 WP_003154894.1 hypothetical protein -
  F7V86_RS13665 - 2613031..2614281 (+) 1251 WP_025649633.1 sensor histidine kinase -
  F7V86_RS13670 comA 2614293..2614958 (+) 666 WP_025649634.1 response regulator transcription factor Regulator
  F7V86_RS13675 - 2615151..2615333 (+) 183 WP_003154891.1 plantaricin C family lantibiotic -
  F7V86_RS13680 - 2615539..2618601 (+) 3063 WP_225623112.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25089.25 Da        Isoelectric Point: 5.9581

>NTDB_id=342689 F7V86_RS13670 WP_025649634.1 2614293..2614958(+) (comA) [Bacillus amyloliquefaciens strain KC41]
MIKILLIDDHIGVAQGTKAILEKSNKMGVTILSCCKEVLNHLKHYEYDLLLLDLYMPELNGMELSKMILRESPDQKIIIY
TGFDISVHFNLLVEVGVSGFISKSSTEEHMIKVIESVIEGDTIIPTHLFKQLRRTEANTFNIDKLEDTIRDITLNEREQD
ILAGVAEGMTNRELSAKLLISQRAVEYILTGVYNKLGVKSRTEALIKANRYSLISMKTIYE

Nucleotide


Download         Length: 666 bp        

>NTDB_id=342689 F7V86_RS13670 WP_025649634.1 2614293..2614958(+) (comA) [Bacillus amyloliquefaciens strain KC41]
ATGATAAAGATTCTATTAATTGATGATCATATTGGTGTTGCTCAAGGGACAAAAGCCATTCTTGAAAAAAGCAATAAAAT
GGGAGTAACAATATTGTCTTGCTGTAAAGAAGTACTTAATCACCTTAAGCATTACGAGTATGACTTACTTTTACTTGATT
TATATATGCCGGAGTTAAATGGAATGGAATTGTCAAAAATGATTCTTAGAGAGAGTCCCGATCAAAAAATTATAATTTAT
ACTGGTTTTGATATCTCTGTCCATTTCAATCTTTTGGTTGAAGTTGGTGTTTCCGGGTTCATAAGTAAGTCTTCAACAGA
AGAGCATATGATAAAAGTAATTGAAAGTGTCATTGAAGGAGATACCATTATTCCTACCCATCTCTTTAAACAATTAAGAA
GAACAGAAGCAAATACGTTCAACATTGATAAGCTTGAAGATACAATAAGAGATATTACTTTAAATGAAAGAGAACAAGAT
ATCTTAGCGGGCGTAGCGGAGGGAATGACAAACCGGGAATTATCAGCAAAGCTGTTGATCAGTCAAAGAGCGGTTGAATA
CATTCTTACTGGTGTGTACAACAAGCTCGGAGTAAAATCCAGAACAGAGGCACTGATCAAAGCAAATCGATATTCATTAA
TTTCTATGAAAACTATATATGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)

Bacterial regulatory proteins, luxR family (GerE)

(154-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

39.81

95.475

0.38